PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0005s0313.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 722aa MW: 78033.3 Da PI: 6.4564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0005s0313.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.3	2.4e-07	629	672	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r RR++ +++ L++l+P+ ++l+ +++L ++ eY++ Lq Sphfalx0005s0313.1.p 629 IAARTRREKFSDRIRILQTLVPNG-----ERLDTVSTLGQTLEYVRFLQ 672 5679****************96.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.44	622	671	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.16E-10	625	678	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-11	628	677	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.16E-8	628	675	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-8	629	677	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-4	630	672	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
MMVARIAETV ASLMSPVVHS SGHDQSQQQQ QQQAENISLQ VSSCTQSTTR LQQQQQQPPP 60 PWMSWNLGMT TSTSNNNVES REFYHGMQLS SSSSSSSTGV AAGRMQASAD RHIIPDKSLD 120 WKKQLGLISR LEHPVARDQL VHPIAGFPLD DDNGCSLTSL VNGYKSAASF GGDLQPRVTT 180 TGSFLVPGCA EFTHGSALGL LSNLSIPPVS RHHAPKSSLF EFGGTRGSCS TPSFCVAGSP 240 VTVDPAMPPK QLMASPDAAA GLVSFHGSTN HDHAATSCCL DSPPSMVDSD HSNSSAASLI 300 SFDESSLEED AGQYNVMQNP SNNSFTWMQQ QAAENRFVDS RFWMQHQPST TMSPDPHASV 360 HRPIAATSTA ISESHFSEDT ISAFRMNPAS TLDNVTADIG KLGHLAGSVR RPHAVVVGSA 420 DESTHNRGPR SWCPQQQWVD QQTMQSSTGQ QVVSLPPSAE ESVHKIVSRD RDHGSTDILN 480 NNLHQQLAAG ATITNRKRSS LELMVDQTSD RLAELVSPWI PANQHRQLGA GVASIQTGVR 540 TSKFQSLEAG RGVGCDDDEQ AAGKLDPAAV SALLYEERQA AAATTEQNLH HCFLHLPDSS 600 LSDDHHLSSR PPPPKMRRRH GTATDPQSIA ARTRREKFSD RIRILQTLVP NGERLDTVST 660 LGQTLEYVRF LQHQVWEFYN SGNEAAACGR AHESEAGAAL PEKWKEFKEH TITAGADHIV 720 A*

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

MMVARIAETV ASLMSPVVHS SGHDQSQQQQ QQQAENISLQ VSSCTQSTTR LQQQQQQPPP  60
PWMSWNLGMT TSTSNNNVES REFYHGMQLS SSSSSSSTGV AAGRMQASAD RHIIPDKSLD  120
WKKQLGLISR LEHPVARDQL VHPIAGFPLD DDNGCSLTSL VNGYKSAASF GGDLQPRVTT  180
TGSFLVPGCA EFTHGSALGL LSNLSIPPVS RHHAPKSSLF EFGGTRGSCS TPSFCVAGSP  240
VTVDPAMPPK QLMASPDAAA GLVSFHGSTN HDHAATSCCL DSPPSMVDSD HSNSSAASLI  300
SFDESSLEED AGQYNVMQNP SNNSFTWMQQ QAAENRFVDS RFWMQHQPST TMSPDPHASV  360
HRPIAATSTA ISESHFSEDT ISAFRMNPAS TLDNVTADIG KLGHLAGSVR RPHAVVVGSA  420
DESTHNRGPR SWCPQQQWVD QQTMQSSTGQ QVVSLPPSAE ESVHKIVSRD RDHGSTDILN  480
NNLHQQLAAG ATITNRKRSS LELMVDQTSD RLAELVSPWI PANQHRQLGA GVASIQTGVR  540
TSKFQSLEAG RGVGCDDDEQ AAGKLDPAAV SALLYEERQA AAATTEQNLH HCFLHLPDSS  600
LSDDHHLSSR PPPPKMRRRH GTATDPQSIA ARTRREKFSD RIRILQTLVP NGERLDTVST  660
LGQTLEYVRF LQHQVWEFYN SGNEAAACGR AHESEAGAAL PEKWKEFKEH TITAGADHIV  720
A*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	3e-15	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Sphfalx0005s0313.1.p