PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0006s0098.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 239aa    MW: 25699.8 Da    PI: 7.6757
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0006s0098.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.5e-2067101135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cgt+kTplWR+gp+g+k+LCnaCG++++k g+
  Sphfalx0006s0098.1.p  67 CAHCGTSKTPLWRNGPQGPKSLCNACGIRHKKAGR 101
                           ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-1961115IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.45561100IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-1363106No hitNo description
Gene3DG3DSA:3.30.50.102.5E-1765101IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.82E-1566101No hitNo description
PfamPF003201.1E-1767101IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406792IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MLESHSSYGS QLSACQSWLP DFLTSKTNPV SATAAAQAGK VQAARAVQAG GQPCLQAAEC  60
SDEVRICAHC GTSKTPLWRN GPQGPKSLCN ACGIRHKKAG RRSAATSTSS ELQQGCHSVV  120
TAGAVKGGSK RKLEEELEQQ YWIYQRDSQA PKHRGGEAFA VQPADSLQLS GTSCNMNWQR  180
SSLLPSPHQC FVHHDNSCHP SLPSIQEEDM LQMKNAFTSD EEEGAKLLMA LFYGMVYA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.13e-16GATA transcription factor 16