PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0006s0204.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 395aa    MW: 43718.3 Da    PI: 7.358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0006s0204.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20284333255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Sphfalx0006s0204.1.p 284 VFRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAVAYDQAAFKLRG 333
                           69******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-13284333IPR001471AP2/ERF domain
PROSITE profilePS5103222.853284341IPR001471AP2/ERF domain
SMARTSM003805.5E-39284347IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-32284341IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23284342IPR016177DNA-binding domain
CDDcd000183.86E-32285343No hitNo description
PRINTSPR003671.8E-10285296IPR001471AP2/ERF domain
PRINTSPR003671.8E-10307323IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MAAAGQSCLQ SRGGAAAAAV RRPCRQSKKE QEQEDDHHHQ LDLLNTELTI GRSRAPDELQ  60
AGCSSSSSSS SFRLELGLGS DRRAEMRDKS LDLTLVPNRV PEEQDTSAAA AASAPAGHGE  120
SGDGEPPPPP PRYYYFTLFE SVGPGSCSSS SSQMNTTTTD VQPDLQIRLP SAHWCVGEEQ  180
EEEQDLRTVA SSQQQGSSQI LQQQQIHQLL ELHQFHRMQE QQQQQQTGMR RSGQQDASSC  240
QEQQHLPQMQ KQLGNGSKKK QQQEKARRRL GPCVKKKQQQ SSKVFRGVRQ RHWGKWVAEI  300
RLPKNRTRLW LGTFDTAEEA AVAYDQAAFK LRGQFARLNF PAHLQHSRHL KQVLQEGTPD  360
PQAPAPAAAA DDDEDSCRDL SVSLSLSRDT TPTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-19283341160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257268KKKQQQEKARRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-24ERF family protein