PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0007s0025.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 781aa MW: 86248.7 Da PI: 6.0539

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0007s0025.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	335.7	8.4e-103	407	777	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 ++lL+ cAeav+++d ++a++++a+l+ l sp+g+ qR+a+yft AL a++++++ +l++al+ ++ s ++ l a+k ++ P+ Sphfalx0007s0025.1.p 407 TNLLIICAEAVKQNDVRKASRIIAELRALTSPSGSGAQRMAHYFTDALVAKMSGTGAQLSAALRNNAPS---PATMLRAYKSLVLHAPY 492 689**********************************************************999998...799999******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpf 176 +++h+ + aIl+a++g+++vH +D++i++G W++L+++LasRp+g+p+lRiTg+++++ +e l + g+rL++fA++++vpf Sphfalx0007s0025.1.p 493 WTLAHFSTTVAILNAFKGATQVHLVDYGIGYGSAWLSLIRELASRPGGAPNLRITGIEKARGIkskPSELLIRCGQRLSEFAKTCEVPF 581 *******************************************************765587789999************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 +f++ +a+++e+++ +L+++p+E+l+Vn ++ +lldesv + ++r+ +L+ ++s+sPkv+v v +a++n++ F+ r+ e+++yys Sphfalx0007s0025.1.p 582 QFSA-IADKWENITATQLALRPDEVLVVNATYRFSSLLDESVMVINPRQMLLNKIRSMSPKVFVTVVANASLNEPFFMSRVHETIKYYS 669 .7******************************************************************************* PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 + fd+l++ +p+ +er E+e+ grei n++aceg er+er e++++W++r+++aGF + pl+ ++++++k++lr ++++ + + + Sphfalx0007s0025.1.p 670 VQFDTLDVIMPPYLNERLLTEQEVYGREILNIIACEGLERVERPESYKQWHSRIQRAGFVQKPLQLSETNTIKSILRSYDKR-FGIGRD 757 ****************************************************************************77.** PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 g+++ gW+++ + ++S W+ Sphfalx0007s0025.1.p 758 GGWFLSGWRNQVMNAFSIWE 777 *****************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.56	380	758	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-100	407	777	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MRSPIGRGGV TETTAKEKLH KDPQLQMALT NKQRSFVATG GGSESSPLAA QLQQAWLQSR 60 LPRVQDSTPY PSSIDAESRD FDAEARAFNQ TSKEPLTTTT TTPTTSSPSS SSSKTSSKTM 120 PTKFTKPTPL TSMQTSLFSH RHKSSCGAPP PTLHSFSTHD ANLNNHMSFF SDPYSVGDSN 180 SPNGGPESLA FLDEMLMEEE DINTEQFYMN KESIGYNEMQ VTFLDQMLME GDDMNGSKPC 240 MYQESNAYQA VEKGFADLIT EGSPSTSTTG SSYYSFVNSR EEGAAAWGAQ TECNNVGCYQ 300 SLDFNQLSEK FNEDEMLNDY TDLLCQHLKQ MGLESSTNSS SNSSNSHASH TDVLVLEAHN 360 PTNIYNNLSQ ESSSTGVGMN LPQGTDIGVT QHNVKFAFDS GDEHDLTNLL IICAEAVKQN 420 DVRKASRIIA ELRALTSPSG SGAQRMAHYF TDALVAKMSG TGAQLSAALR NNAPSPATML 480 RAYKSLVLHA PYWTLAHFST TVAILNAFKG ATQVHLVDYG IGYGSAWLSL IRELASRPGG 540 APNLRITGIE KARGIKSKPS ELLIRCGQRL SEFAKTCEVP FQFSAIADKW ENITATQLAL 600 RPDEVLVVNA TYRFSSLLDE SVMVINPRQM LLNKIRSMSP KVFVTVVANA SLNEPFFMSR 660 VHETIKYYSV QFDTLDVIMP PYLNERLLTE QEVYGREILN IIACEGLERV ERPESYKQWH 720 SRIQRAGFVQ KPLQLSETNT IKSILRSYDK RFGIGRDGGW FLSGWRNQVM NAFSIWEPIS 780 *

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MRSPIGRGGV TETTAKEKLH KDPQLQMALT NKQRSFVATG GGSESSPLAA QLQQAWLQSR  60
LPRVQDSTPY PSSIDAESRD FDAEARAFNQ TSKEPLTTTT TTPTTSSPSS SSSKTSSKTM  120
PTKFTKPTPL TSMQTSLFSH RHKSSCGAPP PTLHSFSTHD ANLNNHMSFF SDPYSVGDSN  180
SPNGGPESLA FLDEMLMEEE DINTEQFYMN KESIGYNEMQ VTFLDQMLME GDDMNGSKPC  240
MYQESNAYQA VEKGFADLIT EGSPSTSTTG SSYYSFVNSR EEGAAAWGAQ TECNNVGCYQ  300
SLDFNQLSEK FNEDEMLNDY TDLLCQHLKQ MGLESSTNSS SNSSNSHASH TDVLVLEAHN  360
PTNIYNNLSQ ESSSTGVGMN LPQGTDIGVT QHNVKFAFDS GDEHDLTNLL IICAEAVKQN  420
DVRKASRIIA ELRALTSPSG SGAQRMAHYF TDALVAKMSG TGAQLSAALR NNAPSPATML  480
RAYKSLVLHA PYWTLAHFST TVAILNAFKG ATQVHLVDYG IGYGSAWLSL IRELASRPGG  540
APNLRITGIE KARGIKSKPS ELLIRCGQRL SEFAKTCEVP FQFSAIADKW ENITATQLAL  600
RPDEVLVVNA TYRFSSLLDE SVMVINPRQM LLNKIRSMSP KVFVTVVANA SLNEPFFMSR  660
VHETIKYYSV QFDTLDVIMP PYLNERLLTE QEVYGREILN IIACEGLERV ERPESYKQWH  720
SRIQRAGFVQ KPLQLSETNT IKSILRSYDK RFGIGRDGGW FLSGWRNQVM NAFSIWEPIS  780
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-41	413	780	26	382	Protein SCARECROW
5b3h_A	3e-41	413	780	25	381	Protein SCARECROW
5b3h_D	3e-41	413	780	25	381	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-104	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Sphfalx0007s0025.1.p