PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0007s0043.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 626aa    MW: 67679.4 Da    PI: 4.565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0007s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20231280255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr+++ +g+W+AeIrdps+     r +lg+++taeeAa a+++a+++++g
  Sphfalx0007s0043.1.p 231 KFRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEEAAHAYDKAARQIRG 280
                           89*******.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-13231280IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22231288IPR016177DNA-binding domain
SMARTSM003807.2E-39231294IPR001471AP2/ERF domain
CDDcd000185.22E-33231288No hitNo description
PROSITE profilePS5103223.828231288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-32231289IPR001471AP2/ERF domain
PRINTSPR003673.8E-10232243IPR001471AP2/ERF domain
PRINTSPR003673.8E-10254270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MPGPQTTLFP RSTAAASMPK VMMQQQVCKK VLKRDLSTES EDEWDPKPQI CPKRVRVICT  60
DPDATDSSSD EEGNFRRSDL MRNSHHRRHV QEINIQAQGG AGGGASSSSD SEDDDVEVPS  120
YHSIFTAQAM KCSLNYASPI GTASVPSQLS KTYNKSSSDS NRKVSLTEKK NPKLSLKKHE  180
RTDKGDSVVA ASITKVVASA AGNVRSKPPL ATAKSLATKI SKGGDDRKIH KFRGVRQRPW  240
GKWAAEIRDP SKGVRLWLGT YDTAEEAAHA YDKAARQIRG PHAHTNFPSQ EGLEQLELAT  300
NPRLVAANSE DARNLKSTDI LKKDAFDQGT RKQSATAGES IKKDSKGVAW TDGALLKAAE  360
KVLCHAAESE VLTERTSSSE QSCHMAALEP TVGEASPSAS ESSEGSALTR RSKEELDDFH  420
NLGEVEQGES FLHDADCALP EEDCANFLMC SPSSVLDGCS TSFSELSTGS IANNLDAFCD  480
PFAGGNTTLE DRSGLSDSKK GNNSHTSDIA IVKSQGNDLT SLELIVIQED SHEKEDKDAA  540
SDSENQDLAD DEKADLQNLA DLSDAFFSDD EFLLDIPECD GGEDLMMEFA ESFDFLGDED  600
KIGDLGFECG NEAFNWFSTP DITIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21232288360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-21cytokinin response factor 1