PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0007s0289.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 288aa MW: 33939.8 Da PI: 6.6062

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0007s0289.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.4	2.6e-25	41	123	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+ +e+++ i++r e+e+++ ++k++k+lWe +++km+e+gf+rs+ qCk+kw+nl +ryk +++e ++ ++cp+f++l+a Sphfalx0007s0289.2.p 41 QWSYHETKEFIAVRAELEKDFTQTKRNKTLWELIAAKMKEKGFRRSADQCKCKWKNLVNRYKGKETNEPDN----GKQCPFFEELDA 123 7************************************************************99999984....668****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	4.64E-26	40	105	No hit	No description
Pfam	PF13837	6.4E-24	41	124	No hit	No description
PROSITE profile	PS50090	7.282	42	98	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MGENLAVMAM LPMQTSPEVG GGDLGSLTAG KRSKKEDRIP QWSYHETKEF IAVRAELEKD 60 FTQTKRNKTL WELIAAKMKE KGFRRSADQC KCKWKNLVNR YKGKETNEPD NGKQCPFFEE 120 LDAIFKERAK SMDRMLLEAE AGSRPRKKGK RGKRSSDDDS DDDDDDDDSE DERIVGRKSR 180 KSEKGQRVTA EKFRANSMQE VLEDFFQQQQ RAEENWHDAM ERREQERRMR EQEWRDAMEK 240 LEQERITREQ GWREREEQRR AREEARAQKR DELFAALLSK LAQEDGY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	1e-11	38	112	3	77	DNA binding protein GT-1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024381970.1	1e-112	trihelix transcription factor GT-3b-like
TrEMBL	A0A176VZJ2	1e-120	A0A176VZJ2_MARPO; Uncharacterized protein
TrEMBL	A0A2R6W406	1e-120	A0A2R6W406_MARPO; Uncharacterized protein
STRING	PP1S285_47V6.1	1e-111	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	2e-37	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0007s0289.2.p