PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0007s0297.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 510aa    MW: 55812.8 Da    PI: 5.469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0007s0297.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-093714111055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+RR+ri +++  L +l+P       +K++ a++L +A+eY+k Lq
  Sphfalx0007s0297.1.p 371 RNRRKRISERIRILEKLIPGG-----TKMDTATMLDEAIEYVKFLQ 411
                           9******************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.449361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.11E-10364413No hitNo description
SuperFamilySSF474599.55E-13366419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-12366419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6371411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MSLGTALFED NFLVAVGTPA YQQLAPEVST WSTTDPTLLG TDHSWKYDRA PMSRAPAFNS  60
DMLTCFHQGA YETLDHGLYR NLQPSADALA DPHFASMQCE ISQRLQFDTL ANQEQYNIST  120
CSSIPMFTAE EAMWSAQCAT CNSASQEDTS SGSINMAKEN WKVEPDMLRL TECMPNFPAE  180
RYSSSVVSDG TCALCDCNST VHSLSLEGMQ QHENFLPLPD ASWIYNQAEE GDDAMQFGRE  240
HHVLAASTSF DVLMPWATST AVASFSRGDR NFSSNDRESV FRHAPDQYPP QSLLAADMTQ  300
RLGFPLSPLS SAEACKEIKI RDPPLIPWQA STGGVQALVG GATRPGNLPE RGKANAKIAT  360
TSIEPQSVTA RNRRKRISER IRILEKLIPG GTKMDTATML DEAIEYVKFL QLQAHFLEAL  420
DDTGKDDAVP SSTLVTKGTK KKRKVASHGG GGDAVFSDQS RSAAAMPIMR RSVTTSPLIL  480
SEVLQQQLFK QRLCLVSLRQ CPSRSVLSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1439444KKKRKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.14e-11bHLH family protein