PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0008s0179.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

LSD

Protein Properties

Length: 207aa MW: 21677.3 Da PI: 7.9642

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0008s0179.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	40.6	4.3e-13	15	39	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL YP GA++VRCalC V Sphfalx0008s0179.1.p 15 CGGCRTLLVYPQGASNVRCALCSSV 39 **********************876 PP
2	zf-LSD1	43.6	4.8e-14	55	79	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y rGA+sV+C++C+tV Sphfalx0008s0179.1.p 55 CAGCRTLLMYMRGATSVQCSCCHTV 79 ************************9 PP
3	zf-LSD1	41.2	2.6e-13	101	125	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+t+L+Y +GA sV+CalC+ V Sphfalx0008s0179.1.p 101 CGGCGTTLMYAYGAQSVKCALCQYV 125 ***********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.9E-15	12	42	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.0E-12	15	39	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.8E-15	52	81	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-11	55	79	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	9.8E-12	98	128	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.7E-12	101	125	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MPYQLMQGVQ GQLICGGCRT LLVYPQGASN VRCALCSSVT TVPPHGAAEM AQLVCAGCRT 60 LLMYMRGATS VQCSCCHTVN LAMELAPPPA AAAAAMAHIN CGGCGTTLMY AYGAQSVKCA 120 LCQYVTSIAM PPNMRIPLPP TQQQQQQLRP IVPIPPQQRL LPPPVSVASN TQSHHTQTVV 180 VENPMTLDES GKLVSNVAVG VTTDTN*

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269\|PubMed:10550898, ECO:0000269\|PubMed:11595797, ECO:0000269\|PubMed:11844114, ECO:0000269\|PubMed:12732715, ECO:0000269\|PubMed:15347794, ECO:0000269\|PubMed:16957775, ECO:0000269\|PubMed:18055613, ECO:0000269\|PubMed:18790826, ECO:0000269\|PubMed:20456049, ECO:0000269\|PubMed:21097903}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By methyl viologen. {ECO:0000269\|PubMed:20456049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024389231.1	4e-84	protein LOL1-like
Swissprot	P94077	4e-54	LSD1_ARATH; Protein LSD1
TrEMBL	A0A2K1KBH6	6e-85	A0A2K1KBH6_PHYPA; Uncharacterized protein
STRING	PP1S11_54V6.1	2e-83	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	4e-48	LSD family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0008s0179.1.p

Publications ? help Back to Top
Spedaletti V, et al. Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana. Biochemistry, 2008. 47(17): p. 4936-47 [PMID:18393445] Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties. Plant Cell Rep., 2016. 35(3): p. 527-39 [PMID:26754794] Czarnocka W, et al. The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator. Plant Cell Environ., 2017. 40(11): p. 2644-2662 [PMID:28555890] Bernacki MJ, et al. LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana. Physiol Plant, 2019. 165(2): p. 369-382 [PMID:30461017]