PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0008s0216.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 406aa    MW: 46115.2 Da    PI: 5.7767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0008s0216.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041102124323
                           ET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                           C+   Cgk+F+    L++H+ +H
  Sphfalx0008s0216.1.p 102 CSfeGCGKVFTEIAALRKHLHVH 124
                           88889***************988 PP
2zf-C2H212.10.00059129153123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           + C+   Cgk F ++s LkrH  +H
  Sphfalx0008s0216.1.p 129 FMCHhkGCGKGFMDSSKLKRHFLSH 153
                           78*******************9888 PP
3zf-C2H223.11.9e-07159183123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           ++Cp   Cgk Fs   nL++H+rtH
  Sphfalx0008s0216.1.p 159 FVCPleGCGKAFSLDFNLRSHMRTH 183
                           89**********************9 PP
4zf-C2H218.65.2e-06189214123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           + Cp  dCgk++ + + L+ Hir+ H
  Sphfalx0008s0216.1.p 189 HACPfeDCGKRYAHEYKLRAHIRSyH 214
                           679********************999 PP
5zf-C2H2120.00066253278123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           + Cp   C+k++ + + L+ H+r+ H
  Sphfalx0008s0216.1.p 253 FACPhaGCTKRYIHEYKLNLHLRNsH 278
                           78*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.0E-1297126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015100124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.365100129IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-7100153No hitNo description
PROSITE patternPS000280102124IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-11127149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.051129153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.651129158IPR007087Zinc finger, C2H2
PROSITE patternPS000280131153IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-16140192No hitNo description
Gene3DG3DSA:3.30.160.609.6E-22150181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.794159188IPR007087Zinc finger, C2H2
SMARTSM003553.7E-4159183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280161183IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-14182213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.45E-6183216No hitNo description
SMARTSM003550.0085189214IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.572189219IPR007087Zinc finger, C2H2
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-8249274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016253278IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536253283IPR007087Zinc finger, C2H2
PROSITE patternPS000280255278IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MRIPEEDPKE YGEEGDVMIT GLLKSDVYNI LDNNSVIGLA ESNPPRRRWL KHWVPQDTVL  60
NPGKLRTLKW IPGDAIPELN DLKVSEEEEH EPEEEYESVY LCSFEGCGKV FTEIAALRKH  120
LHVHGEKQFM CHHKGCGKGF MDSSKLKRHF LSHTGERQFV CPLEGCGKAF SLDFNLRSHM  180
RTHTGEKYHA CPFEDCGKRY AHEYKLRAHI RSYHDKNQPE TTPPLQVERE REVVTPKPVA  240
PSRPDMSASE RPFACPHAGC TKRYIHEYKL NLHLRNSHLD EELETEQLQH EKQGSDDNEE  300
EVAGGSDEEP PPVKATARSS GKGKLCVSSK SSASKAKRKR PTGSAQTVPS TIKVPIGTKP  360
LKRQYQDDSE ETEDEDGEDN DNDHWRGMQR PIAVQDDEET EDDVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-35992138121PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379566.11e-105zinc finger transcription factor YY1-like
TrEMBLA0A2R6WFZ91e-114A0A2R6WFZ9_MARPO; Uncharacterized protein
STRINGPP1S42_134V6.19e-95(Physcomitrella patens)
STRINGEFJ206769e-96(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.15e-87C2H2 family protein