PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0009s0062.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 916aa    MW: 99409.2 Da    PI: 7.1494
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0009s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-14384443155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Sphfalx0009s0062.1.p 384 SVYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 443
                           78*******************655454478446**********99*************98 PP
2AP246.78.1e-15486537155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  Sphfalx0009s0062.1.p 486 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 537
                           78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.07E-20384453No hitNo description
SuperFamilySSF541712.48E-16384453IPR016177DNA-binding domain
PfamPF008471.7E-11384443IPR001471AP2/ERF domain
PROSITE profilePS5103219.072385451IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-15385452IPR001471AP2/ERF domain
SMARTSM003802.3E-27385457IPR001471AP2/ERF domain
PRINTSPR003676.1E-6386397IPR001471AP2/ERF domain
CDDcd000182.28E-23486547No hitNo description
PfamPF008477.8E-10486537IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-17486547IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-18487546IPR001471AP2/ERF domain
SMARTSM003803.5E-32487551IPR001471AP2/ERF domain
PROSITE profilePS5103219.019487545IPR001471AP2/ERF domain
PRINTSPR003676.1E-6527547IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MILPLGLRLD NMRSSDDHES LCIMEALSRS QNSVDHWQLQ EHAMQAADVS HGIHESQAHH  60
LISVDQLSRL TVNRGAVDHQ LQQQQGCTAG AAHYDHMQQR PSSSSAETSR DGPKLEDFLG  120
GKSLGGQYCT DRDHHHSHQH QQLEGLYYNA AAAHGAAASY QEGQTRINVN LPYTTHSAPG  180
GSGSLRDMAP SSTFHLAYGS AVPQQEQSSL ALNHLNHCYE AHEQQQQQQL QENNLLAQSR  240
SHLHAQNLLQ SALDQQRSDC SLQMPQSSSA GLKSWLHHQA DTDSKAAAAL GPQTRHSSSS  300
FSAALASWQP LSLSMSAGSS HVTDHAVDQQ LVLPGHHLAE SSPQAAAVPE PRKRGAGRMG  360
AGAASKDGGP SPRKSIDTFG QRTSVYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY  420
LGGYDKEDKA ARAYDLAALK YWGPSTTINF PLSTYEAELE VMKNMTRQEY VASLRRKSSG  480
FSRGASVYRG VTRHHQHGRW QARIGRVAGN KDLYLGTYST QEEAAEAYDI AAIKFRGVNA  540
VTNFDMSKYD PQKIHAAAVN GQHGQDLSFK CKPTDQKLIT ELSNTPSSDG VFRIQDENQL  600
RIVTSNLPTG TTGSRLELMN TEQDHLVSAG VAPCGLSKNL LEWQTLYHQQ AAAQHKHERN  660
TWGHAGGQDN CSCPHEVDGA GAHRSSTCAP LSFGSDTMRA PASQASSRYN TSTVPSNGML  720
LRNLMGLEVL PQDHGGGESS CSAGSSGLMR HHHGLPNPAA SLLSSSHVYQ GRPDQPAMQQ  780
PAGYDHVGTA ASDQQLQTSE TRAISNSGLT YNQGSHDRSD MNMESPRNSV GESEEASSKN  840
STFDRVLSGD LSQNLLFSAS ATTTSTVKMN PGYDSNPLST WIGISNPLTL PTLTGRPANL  900
SQMGSSPIFA HSWTE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396531.10.0uncharacterized protein LOC112292371 isoform X1
TrEMBLA0A2K1JEI20.0A0A2K1JEI2_PHYPA; Uncharacterized protein
STRINGPP1S131_139V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-111AINTEGUMENTA-like 5