PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0009s0068.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 493aa    MW: 52437.2 Da    PI: 5.1379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0009s0068.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-175297147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++eEd  l ++v+++G ++W++Iar ++ gR++k+c++rw + 
  Sphfalx0009s0068.1.p 52 KGPWSPEEDVVLNRLVEKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 97
                          79******************************.***********985 PP
2Myb_DNA-binding54.72.4e-17104148147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r+++T +Ed  +v a++ +G++ W++Iar+++ gRt++ +k++w++ 
  Sphfalx0009s0068.1.p 104 RKPFTVDEDRAIVAAHAIHGNK-WASIARMLP-GRTDNAIKNHWNST 148
                           789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.614798IPR017930Myb domain
SuperFamilySSF466891.87E-3050145IPR009057Homeodomain-like
SMARTSM007171.2E-1451100IPR001005SANT/Myb domain
PfamPF002494.4E-165297IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2453105IPR009057Homeodomain-like
CDDcd001679.50E-145496No hitNo description
PROSITE profilePS5129426.51499153IPR017930Myb domain
SMARTSM007178.1E-17103151IPR001005SANT/Myb domain
PfamPF002491.4E-14104148IPR001005SANT/Myb domain
CDDcd001671.98E-12106149No hitNo description
Gene3DG3DSA:1.10.10.608.6E-23106152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MIGEMGHGES SAGVVLLQGG STRMKAAAGQ GVQQQQGGGG GGGTVVVDDR IKGPWSPEED  60
VVLNRLVEKF GARNWSLIAR GIPGRSGKSC RLRWCNQLNP GVKRKPFTVD EDRAIVAAHA  120
IHGNKWASIA RMLPGRTDNA IKNHWNSTLR RKYLGDDQGR IKEGSSDGSD KGKEEGSDTE  180
PTQAGHEEND IGDDSSREND GDELGVSLEE RQHSWPSLEQ LSVAEANKDA EMLVDSSRDD  240
RELDVRDAEN ETVQPAAAVK ASDSKVIRPV PWPSAFSTYA ARKVAGNCGG PSRPETCAIG  300
YAAAGTGCFS EPAGSRNSKD DDSLLGSKTV SSFMHPLWTW KTPEAPSHCG RGCCFPQAYG  360
MAPSDNSVSP KSLLMGPDYV DFVEDPISSR GTTVNLTGLL RASENRGTTT SELLSSAIHA  420
VVAQMVVPML QTGQQPPTSF GNFCTGLGTD TTSEQGSQLV GMMQDIIARE ISTYTIAALQ  480
ASKPLNEQNP PP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-39471522107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024376744.11e-153transcription factor MYB1-like
TrEMBLA0A2K1KI541e-152A0A2K1KI54_PHYPA; Uncharacterized protein
STRINGPP1S72_143V6.11e-152(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-55myb domain protein 109