PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0009s0154.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 628aa    MW: 71349.2 Da    PI: 7.2984
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0009s0154.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2147.8e-662816192374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           ++ L++cAea+ ++d ++a+ ++a+l+ ++s++g+ +q +a+y+t AL a+++r+  +ly +   ++ +  +    + a++ + e +P+
  Sphfalx0009s0154.1.p 281 TNKLIKCAEAIGQNDVKNANGIIAELHGHSSSNGNGVQHMAHYVTTALVAKMSRTAAQLYTTACNNTPA--TGRVITRAYRSLWEYTPY 367
                           689*********************************************************876444444..4888889*********** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqG.lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                            k+ h+     I++  +++++vH +D++i++G l+Wp  +++        p+ R    ++     +++++etg+ L +fA+  +vpfef
  Sphfalx0009s0154.1.p 368 CKLHHMFYDANIMDVCKNASQVHLVDYGIMYGsLHWPW-IDQ--------PHPRT---SK----PSQRVQETGQMLFEFAKLWNVPFEF 440
                           ********************************446665.443........33332...23....6789********************* PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           ++ +a+++e++++ +L++++gE+l+V + ++l +l+desv  +++r+ vL+ +++++Pkv+v    +a +n++ F+ r+ e++++y a 
  Sphfalx0009s0154.1.p 441 TT-IAEKWENITPTKLALRKGEVLIVICLFKLRNLMDESVMAKNRRTMVLNNIRTMNPKVFVTGVVNAHCNEPFFMSRVRETIKHYLAK 528
                           **.7************************************************************************************* PP

                  GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                           fd++++ +p++  er+ +E+   grei n++ ceg e   r e            GF + pl  ++  ++k++l +++++ + + ++ g
  Sphfalx0009s0154.1.p 529 FDAMDVVIPSNMIERRELEEI-YGREILNIIGCEGME---RIE-----------PGFVQKPLCPFVDITIKSILGTCHKH-FGIGQDGG 601
                           ********************9.9*************9...444...........6***********************55.******** PP

                  GRAS 357 slvlgWkdrpLvsvSaWr 374
                           ++++gWk++ ++ +SaW+
  Sphfalx0009s0154.1.p 602 WFLMGWKNEIVYGLSAWK 619
                           *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.509254627IPR005202Transcription factor GRAS
PfamPF035142.7E-63281619IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MTFTNKQNSL VRGDGHSPLA TKLQQVLLQS QLPKPQNSGS SPLSSSNETK HQYETQKSPQ  60
SYKSLISNFP IRSSVPRLYS YSTKDSNLRK NESQSMGDFS YGGESKPLIT CLDEMLMEDD  120
INDDLNMCIH QENVAYQTIE KGFADLIDKD SLSQAKGTKT FDSNERKRFE EYNNVWKIES  180
LNFTQLSEKF MEDHLMNELC QHETQSPCVS VSFQSNSGDV VTSNVHCMDP MHNISSPFSS  240
NEPKEHINTR MGIYQPFNVN GGIQDNAIKF VFTNGDENQL TNKLIKCAEA IGQNDVKNAN  300
GIIAELHGHS SSNGNGVQHM AHYVTTALVA KMSRTAAQLY TTACNNTPAT GRVITRAYRS  360
LWEYTPYCKL HHMFYDANIM DVCKNASQVH LVDYGIMYGS LHWPWIDQPH PRTSKPSQRV  420
QETGQMLFEF AKLWNVPFEF TTIAEKWENI TPTKLALRKG EVLIVICLFK LRNLMDESVM  480
AKNRRTMVLN NIRTMNPKVF VTGVVNAHCN EPFFMSRVRE TIKHYLAKFD AMDVVIPSNM  540
IERRELEEIY GREILNIIGC EGMERIEPGF VQKPLCPFVD ITIKSILGTC HKHFGIGQDG  600
GWFLMGWKNE IVYGLSAWKP TIRLTKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2328662025380Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.18e-75GRAS family protein