PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0010s0016.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 719aa    MW: 81848.7 Da    PI: 4.8021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0010s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05688708121
                           EEETTTTEEESSHHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                           ++C+ Cg+ F ++s+L +Hi 
  Sphfalx0010s0016.1.p 688 HTCQTCGQDFESRSQLFKHIT 708
                           79*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002712.4E-201075IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.3E-221097IPR001623DnaJ domain
CDDcd062574.56E-151172IPR001623DnaJ domain
SuperFamilySSF465651.11E-2211124IPR001623DnaJ domain
PROSITE profilePS5007618.1971183IPR001623DnaJ domain
PfamPF002263.4E-191280IPR001623DnaJ domain
PRINTSPR006251.3E-141331IPR001623DnaJ domain
PRINTSPR006251.3E-143146IPR001623DnaJ domain
PRINTSPR006251.3E-145575IPR001623DnaJ domain
PROSITE patternPS0063606079IPR018253DnaJ domain, conserved site
PRINTSPR006251.3E-147594IPR001623DnaJ domain
SuperFamilySSF576671.93E-11311363No hitNo description
PROSITE profilePS501579.619317346IPR007087Zinc finger, C2H2
SMARTSM003550.17317341IPR015880Zinc finger, C2H2-like
PfamPF121712.6E-7318341IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280319341IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325688717IPR007087Zinc finger, C2H2
SMARTSM003550.15688712IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280690712IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MTPPVQGLQE CLYDVLAVER TATPDALKIA YRKQAMKWHP DKIQQSGANP EAYQEATVRF  60
QLISRAYEVL SDPVERAWYD SHRSAILSSA SSSSNAAPGE FEFNVWPYFS PTAFSGFGET  120
GKGFYAVYGE VFRKVHLQEQ MFARVYGTGS VREAPDLGGP GTLYANVTVF YNYWQGFTTE  180
KDFGWCDEYD VMQAPNRKVR RLMEEENKKI RKRERREYSD SVRQLAAFVK KRDKRVREKQ  240
LELQRIQKEK AEMRKQRQLQ LEKEKQEQVR RYKEQDWTKP SEDDYSDESE DDGFLEDDWD  300
RAGKNKEIPK EDDSEEFHCI ICGKHFRSAK QWKNHEQSKK HIGRVSALKD AFMEDDEQVE  360
MLGRHLGVEV PAARQEREAM SEIDNRQTTI GADSEEEVDD ICELDSDPSS NFQQDDTGQN  420
GPEVVDLERS HPQSDSVDEE NDSNEDDEDS MLAAMLKSHL RQNTATNVST ERSESGTANG  480
SIEIEEFTEH FSPPPSHNDT GHCSNEDGEK DENDDEHEDS ILAAMLSSQK NKQKAVAADR  540
VEIVSSVEDG DTHKDNETNN FEEAGVSVSQ DEFTVKDSYP NKEVGESVGK GKARRRAKQE  600
KKQAAVFDRH AATAAELASK EQMQGEVLDN DSKVDRKDDL PPTEVSNAEQ GWEESMRLKE  660
IAQQNRSKLS QRGKKMKKGK GEAKQYAHTC QTCGQDFESR SQLFKHITAT NHAVLKSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dmx_A6e-1413801273DnaJ homolog subfamily B member 8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207215KKIRKRERR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375541.10.0DNAJ protein JJJ1 homolog isoform X1
TrEMBLA0A2K1KIA00.0A0A2K1KIA0_PHYPA; Uncharacterized protein
STRINGPP1S72_296V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.13e-77DNAJ heat shock N-terminal domain-containing protein