PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0010s0041.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GATA

Protein Properties

Length: 654aa MW: 71093.9 Da PI: 6.2548

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0010s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	39.8	6.1e-13	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C+ ++TplWR+gp ++ LCnaCG ++r kg+ Sphfalx0010s0041.1.p 7 CCHCNISTTPLWRNGPPEKPVLCNACGSRWRTKGT 41 99************88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	7.8E-7	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.33E-9	5	44	No hit	No description
CDD	cd00202	2.77E-13	6	55	No hit	No description
PROSITE profile	PS50114	10.712	7	40	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	5.6E-11	7	42	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	7.1E-11	7	41	IPR000679	Zinc finger, GATA-type
Pfam	PF13919	2.4E-7	298	382	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence Send to blast
MGKQGPCCHC NISTTPLWRN GPPEKPVLCN ACGSRWRTKG TLENYMPMHS GGFGGAGCHE 60 VSGDAKHARG RKGAHKPSSE HQSHRHKEPS KPCESLTPLK RKDSVTISDS GWEVQSSSQP 120 APLATESTVH GSLWEGSVPT KKRTMLFRTH APSDKVARHL FKLLHEPPPS DLFTTSCTSS 180 KALLVEYNPP FAAFEVGLGS NFLNRPLPTS AHQEPEGETN SAGYERLEGS ESLDDLNQVI 240 ETRSSGPLTQ LPNGTANNLV AQGKERVKWI TRKMDARSCL LVDRNIPANK PILEKFPYNK 300 RDVLQSCQSP LVLLEMKDIV NFDTFKGLLT EEEQSQLMKF VSSVDLASIP DSLKDMFNST 360 QFEGAFANFQ QLVSEGMFDS AEVGLNHRVL QHFQQLLNIT DLSGSGWIER CFQLQHRSKR 420 GGKPADFSKI KESSKENMKV FGNPVASISL AGYKHSPARV PSQTWGGTLD DLMSHAGSQK 480 HTEFAGNLSP VPSHETSAYG GLEIGKHSQS MNMSTCDIGS SSTEGGYELD TGETCFLGAG 540 MLLADQGCGE GPISVDDLPD IQVPGLDGTE PDLLFHIPSN MMSFQQAELL QRPTCKEEME 600 SNQVENGSLI LGNTWHMDSS PADWGSLFYN PSCAGPGCAL PNGTVLNPGQ VLL*

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence Send to blast

MGKQGPCCHC NISTTPLWRN GPPEKPVLCN ACGSRWRTKG TLENYMPMHS GGFGGAGCHE  60
VSGDAKHARG RKGAHKPSSE HQSHRHKEPS KPCESLTPLK RKDSVTISDS GWEVQSSSQP  120
APLATESTVH GSLWEGSVPT KKRTMLFRTH APSDKVARHL FKLLHEPPPS DLFTTSCTSS  180
KALLVEYNPP FAAFEVGLGS NFLNRPLPTS AHQEPEGETN SAGYERLEGS ESLDDLNQVI  240
ETRSSGPLTQ LPNGTANNLV AQGKERVKWI TRKMDARSCL LVDRNIPANK PILEKFPYNK  300
RDVLQSCQSP LVLLEMKDIV NFDTFKGLLT EEEQSQLMKF VSSVDLASIP DSLKDMFNST  360
QFEGAFANFQ QLVSEGMFDS AEVGLNHRVL QHFQQLLNIT DLSGSGWIER CFQLQHRSKR  420
GGKPADFSKI KESSKENMKV FGNPVASISL AGYKHSPARV PSQTWGGTLD DLMSHAGSQK  480
HTEFAGNLSP VPSHETSAYG GLEIGKHSQS MNMSTCDIGS SSTEGGYELD TGETCFLGAG  540
MLLADQGCGE GPISVDDLPD IQVPGLDGTE PDLLFHIPSN MMSFQQAELL QRPTCKEEME  600
SNQVENGSLI LGNTWHMDSS PADWGSLFYN PSCAGPGCAL PNGTVLNPGQ VLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.1	2e-29	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Sphfalx0010s0041.1.p