PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0010s0133.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 384aa    MW: 42322.4 Da    PI: 9.9825
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0010s0133.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31312369359
                           -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver  edp+++++tYegeHnh+
  Sphfalx0010s0133.1.p 312 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERFLEDPSMLIVTYEGEHNHS 369
                           99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-15266307IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.5E-33298369IPR003657WRKY domain
PROSITE profilePS5081130.492305371IPR003657WRKY domain
SuperFamilySSF1182902.88E-27306370IPR003657WRKY domain
SMARTSM007741.7E-37310370IPR003657WRKY domain
PfamPF031067.0E-27312368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEEELVGRYE PIQEAAKTGI DKVRKLVQIL TQQQQPGGPQ GQEEEEQQDA VARAAISKFQ  60
KVVSLLSRTG HARFRRVPPQ SSSSSSFAGY AFLFSDSSGG GGSAGKEDDG EEVVNKKLKS  120
LDVYLPVQSF LNTCSGHAAD AGGKSLHQAM TQQQGALDQL ERHQQHLQQH HQQQQQLQLQ  180
IQQQLHWQSQ QHQQQQQLQG TSGAMRSLAS LTNSLSSGPP LSTSSKPYSV VSMDGSSRGT  240
TDKLEQLSSL LPPHHRQQRS QLPATRKCPG KADGVKCSAL GRCHCSKRRK LRVKKTIRVP  300
AISSKQAEIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSMR GCPARKHVER FLEDPSMLIV  360
TYEGEHNHSL SSSANTHTLV VHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-203033701076Probable WRKY transcription factor 4
2lex_A3e-203033701076Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.16e-56WRKY DNA-binding protein 21