PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0010s0141.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 187aa    MW: 20803.7 Da    PI: 8.5014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0010s0141.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.79.3e-14106132127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ykte+C+ +++ G+C+yG+rC+FaHg+
  Sphfalx0010s0141.1.p 106 YKTEICNKWLEVGWCSYGSRCQFAHGM 132
                           9************************95 PP
2zf-CCCH20.39.9e-07144168125
                           --S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                           yktelCr  a++G C+y  rC+F H
  Sphfalx0010s0141.1.p 144 YKTELCRMVAAGGKCSYAHRCHFRH 168
                           9**********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.7E-17103136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-11104137IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-7105132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.305105133IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-11106132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-10139169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7139171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258143171IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011143170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MHPGGDARIL VPPVVPVQRV PHFAVPRSIA VRSNVDVMFA RRGPAASPLQ VHSPPGEFLP  60
PPSNRDERRA VGPNSTGPVD HGTSNGDIVE EAVLRLWDHV SDQGMYKTEI CNKWLEVGWC  120
SYGSRCQFAH GMEELRYVLR HPRYKTELCR MVAAGGKCSY AHRCHFRHTL TKEEKAKHFP  180
EATDGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A2e-2198173277Tristetraproline
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021749707.15e-38zinc finger CCCH domain-containing protein 15-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.11e-35C3H family protein