PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0010s0147.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HD-ZIP
Protein Properties Length: 360aa    MW: 39226.1 Da    PI: 7.2982
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0010s0147.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18215269256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           rk+ +++keq   Lee F+ +++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Sphfalx0010s0147.1.p 215 RKKLRLSKEQSALLEESFKDHSTLNPKQKSALAKQLNLRPRQVEVWFQNRRARTK 269
                           778899***********************************************98 PP
2HD-ZIP_I/II118.44e-38215304191
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           +kk+rlskeq++lLEesF+ +++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d e+L+r++++l+een+rL ke +eLr 
  Sphfalx0010s0147.1.p 215 RKKLRLSKEQSALLEESFKDHSTLNPKQKSALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDREVLQRCCETLTEENRRLLKELQELR- 302
                           69*************************************************************************************9. PP

           HD-ZIP_I/II  90 el 91 
                           ++
  Sphfalx0010s0147.1.p 303 AI 304
                           44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-18197269IPR009057Homeodomain-like
SuperFamilySSF466895.13E-18203272IPR009057Homeodomain-like
PROSITE profilePS5007117.167211271IPR001356Homeobox domain
SMARTSM003896.5E-16213275IPR001356Homeobox domain
PfamPF000461.6E-15215269IPR001356Homeobox domain
CDDcd000865.54E-16215272No hitNo description
PROSITE patternPS000270246269IPR017970Homeobox, conserved site
PfamPF021834.7E-8271304IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.2E-19271314IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLLAEGKERF KEDLRTMRVM SAAEDSVVGT ARSLGLNVMD LGVMMVQQRG GYEMNSSSSS  60
APPARQCPVQ LDLLPGLRPA SVTPAAAPSS TNNTFSWQPA PLRNGSRTNS GSGYDDGEVE  120
TFSSGGGGGH TGVSSPARGG GIDMNQLPST TECDEEAVMS SSPSSCIGMK REREKNMLQQ  180
HDQLFEQLLD RERACDLSSR GCSDDEDGGG GGTTRKKLRL SKEQSALLEE SFKDHSTLNP  240
KQKSALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDREVL QRCCETLTEE NRRLLKELQE  300
LRAIKVAAPC VIAHDYYMPL PAATLTMCPS CERVATVDNR SVTFSKPGYS HFSQSPAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213219TRKKLRL
2263271RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379716.11e-126homeobox-leucine zipper protein HAT4-like
SwissprotA2YW033e-65HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2R6WPH01e-131A0A2R6WPH0_MARPO; Uncharacterized protein
STRINGPP1S42_217V6.11e-125(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-56homeobox from Arabidopsis thaliana