PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0011s0033.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 552aa    MW: 59693.6 Da    PI: 4.4639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0011s0033.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.46.4e-22238287255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+W+AeIrdps+     r +lg+++taeeAa+a+++a+k+++g
  Sphfalx0011s0033.1.p 238 KYRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTYDTAEEAARAYDKAAKEIRG 287
                           8********.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-34237295No hitNo description
PROSITE profilePS5103224.197238295IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22238295IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-31238295IPR001471AP2/ERF domain
PfamPF008473.2E-15238287IPR001471AP2/ERF domain
SMARTSM003804.5E-40238301IPR001471AP2/ERF domain
PRINTSPR003673.0E-11239250IPR001471AP2/ERF domain
PRINTSPR003673.0E-11261277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MPGPQSFHKS FTVVSASRGD NKKISRKAVK RELLFAHDSD EDDVWDSSSR RPLQQSRPKK  60
VRVICTDPDA TDSSDDEDIS GSIVVGLNRF LRGGGFHQGR RLVQEIELHT ECTLLSSSSS  120
DSEEAEEADV PSYHSVFTAA TTMPQCGLNC ASSLGTTAFS SEKELPNKSV KSPGSSQAKK  180
KADRKAVRRL SKKEQPSEKN SIKGSASNCP SLLSTSSKTE AAAAAHKLEV GKQPPRQKYR  240
GVRQRPWGKW AAEIRDPSKG VRLWLGTYDT AEEAARAYDK AAKEIRGPLA QTNFEGMVVP  300
SSDDGVLKVC HARPLSQPEV RAGGEHRETE EGENADSVGG IAVQEEESSE EVYDEDESFE  360
EQLEKQFHDF PHPAAAAEEC GFFVCSPSSV VTTDERNSSF SQHSLSSFRE CSEHSVVCDQ  420
ILSGDENLFE GCLVVESTAS LEDCATAAEH QQRTFNHCCS DADLGVAGQN NVCEDVMELS  480
QACFEDADFI FDMSSSAAAA AGEEGLQGGE LMMDLSAISF DLLLDDGDDI ADLVCGNPTI  540
NWFGTSDISV A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20237294159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-19ERF family protein