PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0011s0054.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 789aa    MW: 83956.9 Da    PI: 7.1977
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0011s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.7e-181461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+lv++++++G g+W+++++  g+ R++k+c++rw +yl
  Sphfalx0011s0054.1.p 14 KGLWSPEEDEKLVRYITKYGHGCWSAVPKQAGLQRCGKSCRLRWINYL 61
                          678*******************************************97 PP
2Myb_DNA-binding46.39.7e-1567110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg ++  E++l++d+++ lG++ W+ Ia +++ gRt++++k++w++
  Sphfalx0011s0054.1.p  67 RGGFSSSEEKLIIDLHAVLGNR-WSQIATHLP-GRTDNEIKNFWNS 110
                           7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.43965IPR017930Myb domain
SuperFamilySSF466895.62E-2911108IPR009057Homeodomain-like
SMARTSM007174.6E-141363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001675.76E-121761No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2465116IPR009057Homeodomain-like
SMARTSM007171.1E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.65466116IPR017930Myb domain
PfamPF002495.7E-1367110IPR001005SANT/Myb domain
CDDcd001674.46E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MGRHSCCHKQ KLKKGLWSPE EDEKLVRYIT KYGHGCWSAV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGGF SSSEEKLIID LHAVLGNRWS QIATHLPGRT DNEIKNFWNS CIKKKLRQVG  120
IDPNTHMKLQ QVAATPAGAL LVQHASSHVQ NISSMNCPPS STAPSNNPLQ TYNKLQLLDM  180
GSTGAFNGRS FATTHHDFKA AAASQSSRLL VNQASPQAGN YHGSSMQQQE EDVTFLGAAA  240
LAQNSQVEMM NSGKKYENEL QSRNCRSSTT AAAAAAGLHT NHHPGRGVQN GFQQGSNGLL  300
SSCTDNVLER LLFNNAKQSG MHHYLAPKAG TGSAATGLQQ LGFEPMRNCT NLMQNRSDPS  360
ATTHHDEAQA QAGRSVGIKG ESTAQHVCPA ATTVVPNAFN PAYWLLQGSS ANAAISQADQ  420
EALAGLGTRP GIHAGTLDEI LPAAPSKLHA TAAMIMSTNA AAGDGSSLIS AQSGSRQDQR  480
GHGMKLGRGF PDFYASSAAD QDHGDLSSIT ASINQAAGND ESGRIPSHQL QLLLSSMLEK  540
STGDQQLHQN ALAGAGRMQQ DQKSNEMTMS SRLQAAVDHH GRQQQAARNL QWDSSVSSTN  600
REAIAPGTAA DTTNTDVHQT GFFHSMMWAN FSEKAGAAAV QDRHDQQLDR GAGVAAASSD  660
MVSARDQSCD QISIALSASP ESDGDTVMQW CNDLTLPGPD PDVDDQDHQG TGPPPASSAS  720
QGGSSSAPPP MIDSSAAWQM HQAPTHGTPD LYDARHESRP RVGASGAPAR PCSMSQELQR  780
MAAVLDQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.12e-79myb domain protein 55