PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0011s0112.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 751aa    MW: 81198.5 Da    PI: 6.4975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0011s0112.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-05369391223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp+C+k+F   ++L+rH  + H
  Sphfalx0011s0112.1.p 369 RCPKCKKTFVGLYELRRHYGRkH 391
                           7*****************86666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.41E-6301331No hitNo description
Gene3DG3DSA:3.30.160.607.9E-8303329IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.699305334IPR007087Zinc finger, C2H2
SMARTSM003550.048305329IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280307329IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-6362407No hitNo description
PROSITE profilePS501579.473368397IPR007087Zinc finger, C2H2
SMARTSM003550.12368391IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280370391IPR007087Zinc finger, C2H2
SMARTSM00355210432453IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MAVGPPAATV ISYGFPESLI MSGNPLPQLN DWNASGMVSV GAPSFTSQSL SFNSYGSDSC  60
WWDSYGASTA FGSTLFNNFP NPSMQQSGMM ADSAFLYPSD DAVDHLFLLG NDSDFLQQIY  120
AGSTTSSSTS MISSAAATPV MHPNLVSTLK NMVTPGSLGS STSSTAYHPS SCSATRYMNS  180
SVSQLPSFFD QQSDFQIAAT TAFLRGGLHS QNPVDSNHNI LLQSSVYPGE DFDEMCTRAS  240
LLSTAADEQI TTHIQTVPIK QEEDVIDAEA KSQQLAEFTD QLQAVPDPNE AAVVSVDLIQ  300
NRRPFLCAHA GCSKTFKNPQ TMKMHNKTHT NNADSRGRSS ASAAPATSTP GMMTSSSLKA  360
GHNKKIPSRC PKCKKTFVGL YELRRHYGRK HSEGEKPFGC RKCGKKFYIE LESWIAVQVD  420
VRDHEKLCGE PIECKCGLKF AFKCNLVAHK KAHPACQDHS NNNMESTSAV ISNNTSSTNK  480
NKKPKRSNNM RDDVEDNGAD INHSSSCQDT NCDQSTSSAT SDDFVDLCTS HGSQHRSAPA  540
GPTRGRAAST SGCNPVTSSS HEVEAHHASN PMQHLDQCMM SSITTGSTVA DHQHHPEAHH  600
SFKRARYEFS GMQYCTSGES MWSSNLHYPS GQMSLMSSPA STIHNLPSSF TDHQQYSAAS  660
SGHDQLFSTK QYYNSSMQMM CNSDDQPCSF DVIGSDHDHM QQMICISNSS SMSSAAAGCS  720
FYNDSSGSSF SDHLQHQIPL TSYINSCSSS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.14e-11WIP domain protein 5