PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0011s0156.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 792aa    MW: 86827.6 Da    PI: 4.6177
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0011s0156.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.69.8e-5761331128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           +ppGfrFhPtdeelv +yLk+kv+g+++e+ +vi+ vd+yk+ePwdLp k +++++++ewyfFs+rdkky++g+r+nrat++gyWkatg
  Sphfalx0011s0156.1.p   6 VPPGFRFHPTDEELVAYYLKRKVSGRSMEA-DVIAVVDLYKCEPWDLPdKsCITSHDQEWYFFSPRDKKYPNGSRTNRATEAGYWKATG 93 
                           69***************************9.99**************96358889999******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd+ v+s +++ +g+kktLvfy+grap+g++tdWvmheyr+
  Sphfalx0011s0156.1.p  94 KDRVVKS-GSRSIGMKKTLVFYRGRAPNGKRTDWVMHEYRI 133
                           *****99.99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-624153IPR003441NAC domain
PROSITE profilePS5100560.7736153IPR003441NAC domain
PfamPF023655.8E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MGRRRVPPGF RFHPTDEELV AYYLKRKVSG RSMEADVIAV VDLYKCEPWD LPDKSCITSH  60
DQEWYFFSPR DKKYPNGSRT NRATEAGYWK ATGKDRVVKS GSRSIGMKKT LVFYRGRAPN  120
GKRTDWVMHE YRIEEEEVSG FQDAYVLARV FKKSGPGPKN GEQYGGVFIE EEYQSPSPQQ  180
EDSVVDFPVE EESEVPFSEP AAAATTTTTS LLESALPAVK NETMSEDTSV FNPATAVPET  240
LSKMAPDYQM MKEYLKEETV GAKMAHILPD EWEVHTSHDD IGFLEGFGDP VGSEEEVLML  300
QEILETVQTG GPRVHVEGDP REDFIDQFFS GGVVGGEELI LEGGGGELAL ADIQGHVPPL  360
SYGAEELTPW EIADRDFIEL NDFLFPNNEA LPSWPLEPTI QLQERQSADL LIQGSEQGSA  420
RRRSMLQMRG SRSGPVPRPI TSEYSFVSGQ SSYAMNMPDL TGSSSATTVS RPEARQHEQR  480
SADRLREVQS ASLQPGDEVA TEDRRLNIRE WEDYLFTGLL PQSATFEDTP ALPTTSEDVV  540
VTTPDNSAHD GVVTEGVTTT SSSSLDFDYS VFQSWFDAGR SPPATPQLGD DINESVVKPF  600
DSSPGHHSEY SLQKVQTPVS PETSDTGPPD ASEQNSKRLE VLLHMLGSFP ALPASAAEYS  660
QARAASSSFS SISVTATDAH LTTFTITCSC SNKGMKHVHA AVTSGHAADA AGTKLYKGVI  720
TTGSHKPCRG DCKQLSCVSC SGQTLPTRRL VRGSNSGFVF VFLLGAVSAL CWFLLLRGVW  780
RVVHLMSDAI L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5111331140Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-76NAC domain containing protein 28