PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0012s0027.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 862aa MW: 95097.5 Da PI: 4.8516

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0012s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	445.8	2.9e-136	496	859	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lLl+cAea+s+++l+l+++lL++l elasp+g++mqR+aay+te+La r+ar ++++y+ lp ++ ++++ +a++l+++vsP Sphfalx0012s0027.1.p 496 LITLLLACAEAISTKSLSLVNHLLQKLGELASPEGTSMQRIAAYYTEGLACRVARLWPHIYQPLPFDIHHT--EDKNQTAFHLLNHVSP 582 5789**********************************************************9999985..666677999*** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 + kf+h+t+ Il+aveg++rvH+iDfd++qGlQWpaL+++La Rpegpp ++RiTgvg+ ke le tg+rLa+fAe++++pf Sphfalx0012s0027.1.p 583 YTKFAHFTTIDIILQAVEGADRVHVIDFDVKQGLQWPALFHSLAVRPEGPPaHIRITGVGD----CKEDLEDTGDRLAEFAEAFNIPFT 667 *******************************************88888*****....******************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 f++ v +rled++l++L+vk++Ea+aVn+++qlhrll +s+++ + ++L+l+k+++P+vv +veqe +hns++F +rfle+l++y a Sphfalx0012s0027.1.p 668 FHA-VIDRLEDVRLWMLHVKENEAVAVNCIMQLHRLLYDSGESIK---DFLSLLKTTRPRVVALVEQEGSHNSPNFEARFLESLQFYCA 752 .7*****************************99999888...9************************************ PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 +fdsl+a+l+r+s+ r vEr +++ei+n++aceg+er+erhe +++Wr + +a F +vp++++a +qa+ llr+++ dgy++ ee+ Sphfalx0012s0027.1.p 753 VFDSLDASLARDSRSRLQVERL-FSQEICNILACEGSERVERHEPFAHWRVLMAQAKFINVPVKKRAKAQADILLRMFEPDGYTLSEED 840 *****************9.************************************************************** PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 g+l+lgW+d+pL+++SaW+ Sphfalx0012s0027.1.p 841 GTLTLGWMDQPLFTASAWK 859 ****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.843	470	839	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.9E-134	496	859	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence Send to blast
MLKGQHWLDY SSSIEFLEDE TLPRKLPCKG THATKPNALT IQSLDASGLE ALSNNSVSGQ 60 TAAVQSVQAQ LLFQQLSSLL AEQQTVVTPI PTTPDVDVGD PLASPGRVNY GQAHAESITL 120 VTQEEGRQRP HHFNGTMLRQ GECAEVAAEN SPVYVAASSK SYVDGRLATI ENRLAKISAA 180 LAVHVQAPVA ASCTPTCVIE DLGAVVKVAA KSYTTRDTAR PFGNSIDCKS YATELEGPLN 240 SKVDPLLVPE MLAAPGVSTS ATTAPTNWKH SGGKPVLNLS TLNQWETATV ASMQHKGLGE 300 VFPERPILTQ EDNHVVVPPG WSFDNSETDE ALSIASTHHE RPVKGRLRRT RFSCEDDLVI 360 PPLFQNFNDS ETADTLSAEA LSGLDEWEAA TTASTDHERR AKQWMKSLME DLTGQSRGED 420 SMSPKDTETC TPPFTPGAES SQKHPEQQHE SEQQSGSPSR SDCSREDNQA SEYLQEENPG 480 ETWQGGQQSE EVGQELITLL LACAEAISTK SLSLVNHLLQ KLGELASPEG TSMQRIAAYY 540 TEGLACRVAR LWPHIYQPLP FDIHHTEDKN QTAFHLLNHV SPYTKFAHFT TIDIILQAVE 600 GADRVHVIDF DVKQGLQWPA LFHSLAVRPE GPPAHIRITG VGDCKEDLED TGDRLAEFAE 660 AFNIPFTFHA VIDRLEDVRL WMLHVKENEA VAVNCIMQLH RLLYDSGESI KDFLSLLKTT 720 RPRVVALVEQ EGSHNSPNFE ARFLESLQFY CAVFDSLDAS LARDSRSRLQ VERLFSQEIC 780 NILACEGSER VERHEPFAHW RVLMAQAKFI NVPVKKRAKA QADILLRMFE PDGYTLSEED 840 GTLTLGWMDQ PLFTASAWKP E*

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence Send to blast

MLKGQHWLDY SSSIEFLEDE TLPRKLPCKG THATKPNALT IQSLDASGLE ALSNNSVSGQ  60
TAAVQSVQAQ LLFQQLSSLL AEQQTVVTPI PTTPDVDVGD PLASPGRVNY GQAHAESITL  120
VTQEEGRQRP HHFNGTMLRQ GECAEVAAEN SPVYVAASSK SYVDGRLATI ENRLAKISAA  180
LAVHVQAPVA ASCTPTCVIE DLGAVVKVAA KSYTTRDTAR PFGNSIDCKS YATELEGPLN  240
SKVDPLLVPE MLAAPGVSTS ATTAPTNWKH SGGKPVLNLS TLNQWETATV ASMQHKGLGE  300
VFPERPILTQ EDNHVVVPPG WSFDNSETDE ALSIASTHHE RPVKGRLRRT RFSCEDDLVI  360
PPLFQNFNDS ETADTLSAEA LSGLDEWEAA TTASTDHERR AKQWMKSLME DLTGQSRGED  420
SMSPKDTETC TPPFTPGAES SQKHPEQQHE SEQQSGSPSR SDCSREDNQA SEYLQEENPG  480
ETWQGGQQSE EVGQELITLL LACAEAISTK SLSLVNHLLQ KLGELASPEG TSMQRIAAYY  540
TEGLACRVAR LWPHIYQPLP FDIHHTEDKN QTAFHLLNHV SPYTKFAHFT TIDIILQAVE  600
GADRVHVIDF DVKQGLQWPA LFHSLAVRPE GPPAHIRITG VGDCKEDLED TGDRLAEFAE  660
AFNIPFTFHA VIDRLEDVRL WMLHVKENEA VAVNCIMQLH RLLYDSGESI KDFLSLLKTT  720
RPRVVALVEQ EGSHNSPNFE ARFLESLQFY CAVFDSLDAS LARDSRSRLQ VERLFSQEIC  780
NILACEGSER VERHEPFAHW RVLMAQAKFI NVPVKKRAKA QADILLRMFE PDGYTLSEED  840
GTLTLGWMDQ PLFTASAWKP E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-85	487	860	10	380	Protein SCARECROW
5b3h_A	1e-85	487	860	9	379	Protein SCARECROW
5b3h_D	1e-85	487	860	9	379	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024368133.1	0.0	protein DWARF AND LOW-TILLERING-like
Refseq	XP_024368135.1	0.0	protein DWARF AND LOW-TILLERING-like
TrEMBL	A0A2K1L2I1	0.0	A0A2K1L2I1_PHYPA; Uncharacterized protein
STRING	PP1S63_198V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-124	GRAS family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0012s0027.1.p