PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0012s0116.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 574aa    MW: 63709.3 Da    PI: 5.9789
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0012s0116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.55.2e-53431851128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelv++yL++k  + ++++ ++i+evd++k+ePw+Lp+k k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd
  Sphfalx0012s0116.1.p  43 LPPGFRFHPTDEELVTYYLARKRVNANFKV-HAISEVDLNKCEPWHLPEKSKIGEKEWYFFSLRDRKYPTGMRTNRATEAGYWKATGKD 130
                           79****************************.88***************99999************************************ PP

                   NAM  90 kevlskkgel................vglkktLvfykgrapkgektdWvmheyrl 128
                           + v+++k++                 vg+kktLvfy+grapkgekt+W+mheyr 
  Sphfalx0012s0116.1.p 131 RIVVVSKTSSsgrrppaageaarprlVGMKKTLVFYRGRAPKGEKTNWIMHEYRS 185
                           **999733335566777777788888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6037213IPR003441NAC domain
PROSITE profilePS5100556.52443213IPR003441NAC domain
PfamPF023651.7E-2744184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MAIDCCTIPA ITCNIDGSAR SSTHQVDAGG CKSESDLQPM QWLPPGFRFH PTDEELVTYY  60
LARKRVNANF KVHAISEVDL NKCEPWHLPE KSKIGEKEWY FFSLRDRKYP TGMRTNRATE  120
AGYWKATGKD RIVVVSKTSS SGRRPPAAGE AARPRLVGMK KTLVFYRGRA PKGEKTNWIM  180
HEYRSEVDTT SSQWHRHPRL SKDEWVVCRI FQKNSSGNQP TIKPFATDIR SSSYINAYLQ  240
DFNDRDAHSL LPAAGADHST NNTTPSVMTD GAGTVCTDQC GTTISCTGNY QSCYKCSGLQ  300
DQQELQLADD LQTDNTINDE EIWSAFPWIV RTCSKSTRPT DHAACGSHVA AMRSPGMDHM  360
QNNYMGKHFS DPVLSKLTLK RKIISDSEAA VMQQSDCISS LIESDTPVAY EQSSRYRSVR  420
TKMEGRNYEF STCFARGEDE AQSTLHRKCD QNAACRNTWG ATAGSNCNGA KDVLQHLYNE  480
DVVDDLYESD SNIVAQLQSS FNTCSAGPDQ SSCVSADSFY NSSGDREEDH AAAGGEELFY  540
NTSSSNDVNR TTSFEISDNS AAGDSVSESL WVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-553421911174NAC domain-containing protein 19
3swm_B1e-553421911174NAC domain-containing protein 19
3swm_C1e-553421911174NAC domain-containing protein 19
3swm_D1e-553421911174NAC domain-containing protein 19
3swp_A1e-553421911174NAC domain-containing protein 19
3swp_B1e-553421911174NAC domain-containing protein 19
3swp_C1e-553421911174NAC domain-containing protein 19
3swp_D1e-553421911174NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.13e-76NAC family protein