PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0013s0055.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

NAC

Protein Properties

Length: 375aa MW: 42157.5 Da PI: 7.078

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0013s0055.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.1	2.8e-52	9	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +p+GfrFhPtdeelv +yL kkv++k+++l + ike+d+yk+ePwdL+ ++++++++yfFs++dkky+tg+r+nrat++g+Wk Sphfalx0013s0055.2.p 9 VPVGFRFHPTDEELVGYYLPKKVAAKQIDL-DLIKELDLYKLEPWDLQDlcktpDTNEKQTDYYFFSRKDKKYPTGNRANRATTAGFWK 96 599*************************.99**********9545555445566788********************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk++++k ++l+g++ktLvfy+grap+g+ktdW+mhe+rl Sphfalx0013s0055.2.p 97 ATGRDKPICTKVQQLIGMRKTLVFYEGRAPHGNKTDWIMHEFRL 140 ****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-53	6	162	IPR003441	NAC domain
PROSITE profile	PS51005	54.579	9	162	IPR003441	NAC domain
Pfam	PF02365	2.1E-26	10	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MTHSPTTRVP VGFRFHPTDE ELVGYYLPKK VAAKQIDLDL IKELDLYKLE PWDLQDLCKT 60 PDTNEKQTDY YFFSRKDKKY PTGNRANRAT TAGFWKATGR DKPICTKVQQ LIGMRKTLVF 120 YEGRAPHGNK TDWIMHEFRL DDGPRMPAHD DGGWVVCRVF KKTKNFKMKS DERAASFEGQ 180 FGMMPEIMSS PEILSGAGSS YPVPNNPLVH CKQETNLVTS YNVSCHDSFN AHLAQLAGMS 240 QLEAGNHAMP LSSAGFKGLV QGRNLTRKDM GGFFSEQYAL ENDHNSPSFF TAAARCNENN 300 NPAEDTGLPA LDDWGTLCES TAGKADLRFP TTARGDQSLG DVHILLQLKR QISDLYSSNC 360 EQLDPWNFNQ MYQK*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MTHSPTTRVP VGFRFHPTDE ELVGYYLPKK VAAKQIDLDL IKELDLYKLE PWDLQDLCKT  60
PDTNEKQTDY YFFSRKDKKY PTGNRANRAT TAGFWKATGR DKPICTKVQQ LIGMRKTLVF  120
YEGRAPHGNK TDWIMHEFRL DDGPRMPAHD DGGWVVCRVF KKTKNFKMKS DERAASFEGQ  180
FGMMPEIMSS PEILSGAGSS YPVPNNPLVH CKQETNLVTS YNVSCHDSFN AHLAQLAGMS  240
QLEAGNHAMP LSSAGFKGLV QGRNLTRKDM GGFFSEQYAL ENDHNSPSFF TAAARCNENN  300
NPAEDTGLPA LDDWGTLCES TAGKADLRFP TTARGDQSLG DVHILLQLKR QISDLYSSNC  360
EQLDPWNFNQ MYQK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	9	162	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	9	162	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	9	162	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	9	162	17	165	NO APICAL MERISTEM PROTEIN
4dul_A	2e-43	9	162	17	165	NAC domain-containing protein 19
4dul_B	2e-43	9	162	17	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024392705.1	1e-121	NAC domain-containing protein 30-like
Refseq	XP_024392706.1	1e-121	NAC domain-containing protein 30-like
Refseq	XP_024392707.1	1e-121	NAC domain-containing protein 30-like
Refseq	XP_024392708.1	1e-121	NAC domain-containing protein 30-like
Swissprot	Q9FWX2	3e-70	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	X5IYJ7	1e-120	X5IYJ7_PHYPA; NAC transcription factor PpVNS5
STRING	PP1S223_12V6.1	1e-120	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-72	NAC 007

Link Out ? help Back to Top
Phytozome	Sphfalx0013s0055.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]