PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0013s0065.4.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 322aa    MW: 35299.4 Da    PI: 6.8707
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0013s0065.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.4e-16220256135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kgl
  Sphfalx0013s0065.4.p 220 CVHCGIGEksTPMMRRGPSGPRTLCNACGLMWANKGL 256
                           ****865556***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.92976111IPR010399Tify domain
SMARTSM009792.7E-976111IPR010399Tify domain
PfamPF062005.6E-1378110IPR010399Tify domain
PROSITE profilePS5101712.957144186IPR010402CCT domain
PfamPF062033.0E-15144186IPR010402CCT domain
PROSITE profilePS501148.972214270IPR000679Zinc finger, GATA-type
SMARTSM004018.0E-12214267IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-12217263No hitNo description
Gene3DG3DSA:3.30.50.101.4E-15219261IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.2E-14220256IPR000679Zinc finger, GATA-type
CDDcd002024.00E-15220262No hitNo description
PROSITE patternPS003440220247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MIEKHQVQAR AQGEAQGDSN RRHGHHVHNG HGMHHSQENG AEEHDDDPGD EEGLDEAVMH  60
SDGGQEEGPP QALSVRSQGS TQLTLSYQSE VYVFDTVPPE KVQAVLLLLG GREIPPGMSG  120
NNMSYHNHHK GLAELPARMD MPHRLASLTR FREKRKERCF DKKIRYSVRA EVAQRMQRKK  180
GQFASARRAG EEAGAVASWD GTAVPAQAAG PMGVQSDVMC VHCGIGEKST PMMRRGPSGP  240
RTLCNACGLM WANKGLLRDL SKNLPASQVT QQPHTIQQEE TVLQQQKPIA RVQQVLDHSS  300
PPVNESPQET QGADVGYEKE Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024395439.11e-127GATA transcription factor 28-like isoform X1
RefseqXP_024395440.11e-127GATA transcription factor 28-like isoform X1
RefseqXP_024395441.11e-127GATA transcription factor 28-like isoform X1
RefseqXP_024395442.11e-127GATA transcription factor 28-like isoform X1
RefseqXP_024395443.11e-127GATA transcription factor 28-like isoform X1
RefseqXP_024395444.11e-127GATA transcription factor 28-like isoform X2
SwissprotQ8GXL74e-76GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A4D6QHA31e-127A0A4D6QHA3_9BRYO; TIFY motif family protein
TrEMBLA9SDP91e-128A9SDP9_PHYPA; Predicted protein (Fragment)
STRINGPP1S69_103V6.21e-126(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-72ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]