PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0013s0097.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GRAS
Protein Properties Length: 734aa    MW: 81081.9 Da    PI: 5.9776
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0013s0097.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.99.3e-1113577242373
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                            +lLl+cA++++++d ++a+ l+ +l++++s +g+ +qR+a yf+eAL arl++++ +ly+a+ ++  +    +  l+a++l+++  P+
  Sphfalx0013s0097.1.p 357 SDLLLRCAKMMEQNDVRKANDLIGELRQHSSAYGNGLQRMAYYFMEALVARLSGTGGQLYAAVCSNGPP---PVMLLKAYRLYVDNLPY 442
                           689*********************************************************999777777...7999************* PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                            k+ hl  N +Il+a++g++rvH+iD++i++G+QWp+L+q La+Rp+gpp+lRiTg++++++g  s++++ etg rL++fA+  +vpfe
  Sphfalx0013s0097.1.p 443 TKINHLFSNTTILDAFKGASRVHVIDYGIGNGVQWPCLIQDLATRPGGPPHLRITGIDRQQPGsnSSKRVLETGCRLTEFARLWKVPFE 531
                           ***********************************************************9999999999******************** PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           +++  a+++e++++ +L+++++E+laVn+  qlh+lldesv  es+r+ vL+ ++sl+Pkv+v       +n++ F+ rf e+++++s+
  Sphfalx0013s0097.1.p 532 YHA-FAEKWETITTAQLALRKDEVLAVNCF-QLHNLLDESVMAESPRKIVLSRIQSLNPKVFVQGVVSGGYNAPFFMSRFQECMRHFSV 618
                           ***.6************************5.6********************************************************* PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                           +fd++e ++p+++ +r+ +E+e++grei n+vaceg er+er e +++W++r ++aGF++ pl+  + +++k ++  +++d + + e+ 
  Sphfalx0013s0097.1.p 619 MFDAVEGSIPPDDPNRVLLEQEWFGREILNIVACEGLERVERAEPYRQWQSRTQRAGFTQRPLNPVILSKMKVMMGSYHKD-FGIGEDG 706
                           *******************************************************************************77.******* PP

                  GRAS 356 gslvlgWkdrpLvsvSaW 373
                           g+++ gWk++ +  +S W
  Sphfalx0013s0097.1.p 707 GWILTGWKNHIVHGLSTW 724
                           ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.841330706IPR005202Transcription factor GRAS
PfamPF035143.2E-108357724IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MRDSNKSRGD FSPLATQLQQ AWLQSQIPKV QKRRLSTTPA QGGRGSSFYR TDPLQNGSFT  60
ADFPGLASHR TDLAQPSASL EGLNHSVFPE RPVLPTLSSY STKTCNFRAR RGGDDDPAST  120
SGRNVCPRRS FSTSGVEALP SASEQGAASS NAFFVERGAR SSSLKNDHSA ADDSSRETEV  180
SPLTLLHSIP LDEGGSEMKR STDTSSSYRV KAEEIVDFLG DVSVPETSCS YASNGSPEMC  240
DDDNSWIDEI LCVPEQSEAH TEADGWMHEN SGGLSHLAAD TSKGGSKTVS IKLEENEMGW  300
CSEALNVNQY LDREARAPAR MDCGDYLPPL KQEGFESSVR SWFEASYGAD LPPVDLSDLL  360
LRCAKMMEQN DVRKANDLIG ELRQHSSAYG NGLQRMAYYF MEALVARLSG TGGQLYAAVC  420
SNGPPPVMLL KAYRLYVDNL PYTKINHLFS NTTILDAFKG ASRVHVIDYG IGNGVQWPCL  480
IQDLATRPGG PPHLRITGID RQQPGSNSSK RVLETGCRLT EFARLWKVPF EYHAFAEKWE  540
TITTAQLALR KDEVLAVNCF QLHNLLDESV MAESPRKIVL SRIQSLNPKV FVQGVVSGGY  600
NAPFFMSRFQ ECMRHFSVMF DAVEGSIPPD DPNRVLLEQE WFGREILNIV ACEGLERVER  660
AEPYRQWQSR TQRAGFTQRP LNPVILSKMK VMMGSYHKDF GIGEDGGWIL TGWKNHIVHG  720
LSTWEPSSVA TNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5436272824381Protein SCARECROW
5b3h_D2e-5436272824381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12733PKVQKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-116GRAS family protein