PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0013s0098.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

NAC

Protein Properties

Length: 546aa MW: 59344.2 Da PI: 5.8929

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0013s0098.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.9	3.3e-56	44	174	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv++yL++kv ++++ + ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd Sphfalx0013s0098.1.p 44 LPPGFRFHPTDEELVSYYLAQKVCNSSFAV-HAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGMRTNRATEAGYWKATGKD 131 79***********************999.88***********99999******************************** PP NAM 90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++v+++ +elvg+kktLvfy+grapkgekt+W+mheyrle Sphfalx0013s0098.1.p 132 RDVTRSsrpPHELVGMKKTLVFYRGRAPKGEKTNWIMHEYRLE 174 987666778**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-62	41	209	IPR003441	NAC domain
PROSITE profile	PS51005	59.927	44	209	IPR003441	NAC domain
Pfam	PF02365	1.6E-28	45	173	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MATPTTDHPC SIGSLNEVRS WREKEQAAVA AAGGGGGGGD QTWLPPGFRF HPTDEELVSY 60 YLAQKVCNSS FAVHAIAEVD LNKCEPWDLP EKAKMGEKEW YFFSLRDRKY PTGMRTNRAT 120 EAGYWKATGK DRDVTRSSRP PHELVGMKKT LVFYRGRAPK GEKTNWIMHE YRLEGAAAAA 180 VDSNPLCHLV QHHPRITKDE WVVCRIFQKS AGGKKLSSFL YADSRFLQDA FLYQQLDDLT 240 TGSATALLPA AALGSLQAQS PNPTVTDDDD GNFADCETCG GGGGATNNYN ESTGAGCISC 300 ATYPNCHDSQ LLQSSPNFFN HKENTAPLPA SGAAGMWITA KSRSGVGAGM ILQPQQAGSI 360 IGMSGMDQVI HQAAAGSGTL MSSMAKLCPN YELGFDPSSG KNMSIMPRMD FASQAYAAQC 420 TSNLISLKAL ERASLRAKLE PYCYNGDDDD DDDDDDDEAQ SSQRVTLGSY HGWGNMEHHQ 480 HQHHHHPIFS EPLQRNLIGA DVPCITQTLC GAPPADQLPP GLFRYNNNKF GLPEATVDSL 540 ERMFA*

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MATPTTDHPC SIGSLNEVRS WREKEQAAVA AAGGGGGGGD QTWLPPGFRF HPTDEELVSY  60
YLAQKVCNSS FAVHAIAEVD LNKCEPWDLP EKAKMGEKEW YFFSLRDRKY PTGMRTNRAT  120
EAGYWKATGK DRDVTRSSRP PHELVGMKKT LVFYRGRAPK GEKTNWIMHE YRLEGAAAAA  180
VDSNPLCHLV QHHPRITKDE WVVCRIFQKS AGGKKLSSFL YADSRFLQDA FLYQQLDDLT  240
TGSATALLPA AALGSLQAQS PNPTVTDDDD GNFADCETCG GGGGATNNYN ESTGAGCISC  300
ATYPNCHDSQ LLQSSPNFFN HKENTAPLPA SGAAGMWITA KSRSGVGAGM ILQPQQAGSI  360
IGMSGMDQVI HQAAAGSGTL MSSMAKLCPN YELGFDPSSG KNMSIMPRMD FASQAYAAQC  420
TSNLISLKAL ERASLRAKLE PYCYNGDDDD DDDDDDDEAQ SSQRVTLGSY HGWGNMEHHQ  480
HQHHHHPIFS EPLQRNLIGA DVPCITQTLC GAPPADQLPP GLFRYNNNKF GLPEATVDSL  540
ERMFA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-54	41	215	17	174	NAC domain-containing protein 19
3swm_B	2e-54	41	215	17	174	NAC domain-containing protein 19
3swm_C	2e-54	41	215	17	174	NAC domain-containing protein 19
3swm_D	2e-54	41	215	17	174	NAC domain-containing protein 19
3swp_A	2e-54	41	215	17	174	NAC domain-containing protein 19
3swp_B	2e-54	41	215	17	174	NAC domain-containing protein 19
3swp_C	2e-54	41	215	17	174	NAC domain-containing protein 19
3swp_D	2e-54	41	215	17	174	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-82	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Sphfalx0013s0098.1.p