PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0014s0052.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 311aa MW: 36335.6 Da PI: 6.0592

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0014s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.7	4.9e-21	49	140	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg.....ekkrt.sessstcpyfd 83 +W +e+++ i++r e+e+++ ++k++k+lWe ++ km+e+g++r++ qCk+kw+nl ++yk +++ e+k+t + + + p+f+ Sphfalx0014s0052.1.p 49 QWGYDETKEFIALRAELEKDFMQTKRNKTLWEFIAGKMKEKGYRRNADQCKCKWKNLVNQYKGKETTfqpdyEGKETsEVDNGKLPFFE 137 7*************************************************************987542222144443133444667777 PP trihelix 84 qle 86 +l+ Sphfalx0014s0052.1.p 138 ELD 140 766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	6.92E-27	48	113	No hit	No description
Pfam	PF13837	1.2E-17	49	142	No hit	No description
PROSITE profile	PS50090	6.969	50	106	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGRPGGPMGE NLAVMAMLPM QTSPDVGVAK LGSMTPGIRR SKKEDRIPQW GYDETKEFIA 60 LRAELEKDFM QTKRNKTLWE FIAGKMKEKG YRRNADQCKC KWKNLVNQYK GKETTFQPDY 120 EGKETSEVDN GKLPFFEELD AIFKDRAKNM DRMMLLEAEA GSRPHKKGKL GKPPSSDEDS 180 DDGNDEDNDS EDERINIGAR KSRKSDKGQR VTAEKFRANS MQEVLEGFFQ QQQRAEEHWH 240 DAVERREHEW HMREQEWRDA MEKLEQERIT REQGWHEREE QRRAREEARA QKRDELFAAL 300 LSKLAQEDGY *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024356666.1	1e-100	trihelix transcription factor GT-3b-like isoform X2
TrEMBL	A0A176VZJ2	1e-107	A0A176VZJ2_MARPO; Uncharacterized protein
TrEMBL	A0A2R6W406	1e-107	A0A2R6W406_MARPO; Uncharacterized protein
STRING	PP1S301_41V6.1	3e-99	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	7e-37	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0014s0052.1.p