PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0015s0073.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 705aa    MW: 75764.6 Da    PI: 6.5086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0015s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.7e-161461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd +l  +v+  G+g+W+++ ++ g+ R++k+c++rw +yl
  Sphfalx0015s0073.1.p 14 KGAWTAEEDNKLRAYVEANGTGHWRSVGKKAGLQRCGKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding56.75.5e-1868110246
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           g++T +E+el++++++ +G++ W++Ia++m+ gRt++++k++w++
  Sphfalx0015s0073.1.p  68 GSFTSDEEELIIELHATHGSR-WSLIAAKMP-GRTDNDIKNHWNT 110
                           78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.027961IPR017930Myb domain
SuperFamilySSF466892.79E-2912108IPR009057Homeodomain-like
SMARTSM007171.0E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-221568IPR009057Homeodomain-like
CDDcd001673.86E-101661No hitNo description
PROSITE profilePS5129426.5562116IPR017930Myb domain
SMARTSM007172.2E-1666114IPR001005SANT/Myb domain
PfamPF002493.2E-1668110IPR001005SANT/Myb domain
CDDcd001671.37E-1269112No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MRRLSSKPDE DVRKGAWTAE EDNKLRAYVE ANGTGHWRSV GKKAGLQRCG KSCRLRWTNY  60
LRPDIRHGSF TSDEEELIIE LHATHGSRWS LIAAKMPGRT DNDIKNHWNT RLKKRLCDMG  120
IDPVSHKPIS ELLWDLATRT IAHSPGSNKV AEQAAKRCFS DSLLNKAVRE SCIRPTSTTG  180
LSSFQSEVTD VKNIMISNKG EEKYYDHAAP AAAALVTAAA RDDVDDDEAF HVGRNLAQEL  240
VDRQAEHSNN SGSNYSMGES SCSEAASFCR GGSHRRHHHH QQLGDGWEKT TKLQKKSTLS  300
SSAPEAQITY TTSSAAFTGA GASAGGESEF CHHDTSAAAD KKRNQFHRGM DLQMISSQFT  360
MPASTSSSSK TSNEIQRMEQ YGTLLHSHSL AVPPQFGDHA PTTTAAAAAA TTTTTTPVIN  420
AGQSSSPNND YYARYLAELA RVRNGMLRFP IMENLQQFAP EVSTTTTTTT TTTTQPMQMM  480
GQAAQGSGMM MMMGGHVQDS EDQEFRSSCQ DEEESSHDVE RSIPQELQFL QEYSMQDHYQ  540
AAGAAAQIQQ IAPAAAAHDE LSAAPGGVLG GSSSASASLS SSSTSLVPAL SFLAPNNSNS  600
PASQQSLSMS GTGNAGSSSS PTMTGGPLAN FSGPLVNFSG PLANFSGPLV NFSGPLVNFS  660
GPFSNFSGPI GNFSGPLTTG LKLQDYGDLP SPRMVQLWDY HEQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27111164108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.14e-59myb domain protein 103