PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0015s0253.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 248aa    MW: 27684.8 Da    PI: 9.2647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0015s0253.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-141863146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                          +g+W +eEde+lvd+v+q+G ++W++I ++  + Rt+k+c++rw +
  Sphfalx0015s0253.2.p 18 KGPWMPEEDEILVDYVRQFGARDWSSIRSKGLLPRTGKSCRLRWVN 63
                          79*************************8876677**********87 PP
2Myb_DNA-binding45.22.2e-1476115445
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           + +eE++l v+  ++lG++ W++Ia++++ gRt++++k++w 
  Sphfalx0015s0253.2.p  76 FAPEEEKLVVEMQAKLGNK-WAKIASCLP-GRTDNDVKNFWS 115
                           679****************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.0711369IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-201368IPR009057Homeodomain-like
SuperFamilySSF466894.12E-2717114IPR009057Homeodomain-like
SMARTSM007172.7E-111767IPR001005SANT/Myb domain
CDDcd001671.79E-122065No hitNo description
PfamPF139215.3E-132183No hitNo description
Gene3DG3DSA:1.10.10.605.3E-1769120IPR009057Homeodomain-like
PROSITE profilePS5129415.95270122IPR017930Myb domain
SMARTSM007175.0E-1272120IPR001005SANT/Myb domain
CDDcd001674.23E-1175114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MMSMMMKSIP NGDEVLRKGP WMPEEDEILV DYVRQFGARD WSSIRSKGLL PRTGKSCRLR  60
WVNKLKPDLK RSGCKFAPEE EKLVVEMQAK LGNKWAKIAS CLPGRTDNDV KNFWSTRQKR  120
ILRALQRPKM PSGSTDASAD TSDLSKDPSL SDFNALQVHS PTGGVASMIG AGFVPPFIFA  180
EEESPFRDTT SSDIRRLRQN AHSFTSMDVD DVLNIKLEHM TAGGMYIVVL HSPLNGQFDM  240
HHSGPCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271612025126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024363644.11e-116uncharacterized protein LOC112276493
RefseqXP_024382208.11e-116myb protein-like
TrEMBLA0A3G9ESP11e-119A0A3G9ESP1_9MARC; R2R3 MYB transcription factor DUO POLLEN 1
STRINGPP1S114_136V6.11e-116(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.19e-55MYB family protein