PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0016s0059.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 671aa    MW: 70938.4 Da    PI: 5.2311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0016s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-20265314255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Sphfalx0016s0059.1.p 265 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYNLRG 314
                           59******9.**********955...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.42E-30264324No hitNo description
PROSITE profilePS5103222.906265322IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-22265323IPR016177DNA-binding domain
SMARTSM003801.7E-38265328IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31265322IPR001471AP2/ERF domain
PfamPF008477.3E-14266314IPR001471AP2/ERF domain
PRINTSPR003671.0E-10266277IPR001471AP2/ERF domain
PRINTSPR003671.0E-10288304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MAVVADRLAY MPPTGHMNFP SCAAGSHVRQ ASAGSTEREF SMLGVQCDSN SWLADLGTSY  60
CSSSSSSSSS ERPGISNSDD GRADMRSCYS SFWPGFNYEV LLGSSGEAHE SSLSTTSSLQ  120
HLPVGQVVYS SAAPVDLRSV QQLVPVELSC SGSIQTQQPQ QLQRFDVVQQ LQQLQSMQIQ  180
QQQQQEQLLQ FQLLEAAAAS VYHENQLQWS SNRGRGSSEA GCSLGPRPIL MKKQQAHDKR  240
GVGVVGPSGS AAAAGGPRVQ QTSKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAEE  300
AALAYDKAAY NLRGDCARLN FPPQRNNSDD QLAASLSTGG STHSSDPNCS SWISSCSAGV  360
GTAATPGGLM SEKLPSTLSM KLETCIAYRK KAVQARNDEA GGGCSIQAAT PSPSLMEPDH  420
NRSGLQESNL ELAVSNDEPA ACMPSSSSSS LRVEGSCVTI ARALPAAGAD MSCSQIINTS  480
AAAAAAAQDL QGRSGGESAA GGTLMTQYRS SSQSSPSELV SDACSCIEDP AAGASDSCMW  540
EELVDILNNC DAAASEADLS SWADIIDFPL STRATSDSEP ELLQEPNPSL ICSKPEDAAA  600
AYSSNYHSSL SSSIVAWGSH HQQQLQEADN FAPGTAAAGN MKKKPLPARL VCSSSTLSPV  660
HQVRVWRNCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-20264322160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.15e-27ERF family protein