PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0016s0124.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 739aa    MW: 75497.9 Da    PI: 10.0854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0016s0124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-0588110123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k F r  nL+ H r H
  Sphfalx0016s0124.1.p  88 FVCEICNKGFQRDQNLQLHRRGH 110
                           89******************988 PP
2zf-C2H212.10.00058164186123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +t+
  Sphfalx0016s0124.1.p 164 WKCDKCSKRYAVQSDWKAHSKTC 186
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-587110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-787110No hitNo description
PROSITE profilePS5015710.94988110IPR007087Zinc finger, C2H2
SMARTSM003550.01788110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM00355220129159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4152185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-7159184No hitNo description
SMARTSM00355140164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MTLSNITIAS AGEASVSSGN RTDGNNNSAQ QQLPTTSNPA TPATTTTTVS SGQPPGGAKR  60
KRNLPGTPDP EAEVIALSPR TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT  120
SKEIRKRVYI CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK  180
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RVSAAGKHGG DSNMVVVGPS  240
MSILGGVPPS SPHGNNNLGR VNGGGDSLAS IGGGGSMRPG LPSSMAAGLG RLGEGGGGGG  300
GGLSLLPPRW GQAVGNAPAT SGILNPLEYD VPQAPRPSSS GGGGLLPMVS SATGSLFAHL  360
FSSGGTMPGL HGTHPGNSGA TSMGMGISGF SDFTAGANQT ERGSATAGLS LSSTATGLSS  420
CSSSVYNNGI GSVPSGSLLF NQQQQQQQQQ QQQQQHTATA QMSATALLQK AAQMGATASN  480
SMLRGLGFGG GDSSSMALWQ GQRQEQGRAN EIPPNKASMV QPLQMRRQVE VPSASPVVGG  540
ASMGVSNFGG SNQGRSNDHH AAGVQDFMNS LSGGAGLFAA GSLSNMPSLF AGPNSGNMGG  600
MMPPGGNHRH HHRISTNDVM GGGGHSPYHH PAAASAAGPV SQGGSMGPSS MLPGLGGGST  660
RGEDGSDRFT HDFLGVGGAS GMAGAVGGMG RTLSQRDLAS ITSLGPGVDL GAFFTQRENL  720
RSVGASGHSP GKSWDASS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-36160224367Zinc finger protein JACKDAW
5b3h_F5e-36160224367Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.10.0protein indeterminate-domain 1-like isoform X1
TrEMBLA0A2K1L2D80.0A0A2K1L2D8_PHYPA; Uncharacterized protein
STRINGPP1S165_3V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-113C2H2 family protein