PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0016s0132.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 877aa    MW: 95757.1 Da    PI: 8.6155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0016s0132.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.9e-05109131123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C++C++ F r  nL+ H r+H
  Sphfalx0016s0132.1.p 109 FICEICNQGFQRDQNLQMHRRRH 131
                           89********************9 PP
2zf-C2H213.40.00023190212123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ C+k +  +s++k H++t+
  Sphfalx0016s0132.1.p 190 WVCERCSKGYAVQSDYKAHLKTC 212
                           58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-5108131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012109131IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679109131IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SMARTSM00355130154184IPR015880Zinc finger, C2H2-like
SMARTSM00355150190210IPR015880Zinc finger, C2H2-like
SMARTSM00355140216236IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MCTSMTAHQL HAHAAQILRL SGGCDDIHPI TNAAVITLQK NSPAADSPGS GDLYSNVGDH  60
PSHDSLQLAA TPANSGGNNK RRRRPAGTPD PDAEVVALSP KTLMESDRFI CEICNQGFQR  120
DQNLQMHRRR HKVPWKLLKN TSSSRLATHK KRVYVCPELT CLHHEPQHAL GDLVGIKKHF  180
RRKHCSKKQW VCERCSKGYA VQSDYKAHLK TCGTRGHCCD CGRVFSRVES FIEHQGSCSA  240
AAKVQKGTNV RSGKKLSITL QQRRSTLMST RGRNVVSSTD IASPSRESSD TSIVPFANSA  300
GIELENTAAA RGSADSSTFI NEQVTTRTTS SCCRFDQSSN HNITRSSNVI PTWVLERRSE  360
LQQLLPLPGI DQVQSRLQES YNNSDVTLAS STVEQAGHDM QLQALASHNF SARCSNKNSA  420
ICREVISNFT RDCRSLVRPA SSDSCCVVDD VPSLQLTIGH FSESPRDPQM ISTSDRRSKD  480
VIIDAARSRD TKPNPRADVD QTRSLHGVAM SDYQLQTVQE VNPDAEAAAS GDHHAALIMQ  540
RSASNKGIGE DLALMSTFPA ITASLPPRQT AQDSGPAAGV PDHNGSPDFI DKHIAKCADH  600
HHQQVISQSE FPIVARTSRI EGALTRQTEL AATTCAEANK AREQARMEMK SALSDLAAAR  660
RTKEQARLES TEAGNEIARA ELIKHQAREQ LQQASAEKAF AQHARDVAKR QKDMAETELA  720
DAKRMRERAQ AEIDKSRLLH LKARSSRDDQ CSPGAVNAIT RLMSSPRDHH ILQNSTEICQ  780
VCKSESAVGS DLTLGLHQTN RGNTPIRPSS AVNASRPVPP DHKIRATQTA SHEISSTSAA  840
GLVSYPKRGE SIKVRLEDAT CSDKSQLMLE QSHGIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-17187240457Zinc finger protein JACKDAW
5b3h_F7e-17187240457Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.18e-98C2H2-like zinc finger protein