PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0016s0161.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family M-type_MADS
Protein Properties Length: 255aa    MW: 28078 Da    PI: 6.5889
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0016s0161.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.62.8e-171052244
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                           i+++  r vt+skR++g+lKK +EL vLC++ev+++   + g
  Sphfalx0016s0161.1.p 10 HIKSDASRAVTYSKRKKGLLKKVKELAVLCGVEVCLMCHPQVG 52
                          699*********************************8766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.82161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-23292IPR002100Transcription factor, MADS-box
CDDcd002663.23E-25283No hitNo description
PRINTSPR004042.4E-11323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-161155IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRNKIAIAH IKSDASRAVT YSKRKKGLLK KVKELAVLCG VEVCLMCHPQ VGAPLTWGTP  60
GVAPVIARYK SLACEEREKR KLDNTTLLHH QLQKLTADLH HLVDQNRKLA DNLESPLWDD  120
RLNAYGLEEL EEVANQLLLK KEEVADHLAH FSNSAQLSDQ QVAALALNQE QTMSFLQQRG  180
GGSALFLDQM KMENAATSCC FGRPESCCNA AAPPVDNYCT FTNDPPPPPS SSSSLLQDQD  240
NQTLLDFSHF ISQL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024392908.14e-61MADS-box transcription factor 6-like
TrEMBLA9RZK19e-60A9RZK1_PHYPA; Type I-M beta MADS-box MADS-domain protein, PPTIM7
STRINGPP1S37_353V6.11e-60(Physcomitrella patens)