PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0017s0002.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 577aa    MW: 62159.8 Da    PI: 7.6878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0017s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20355404356
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           ++GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Sphfalx0017s0002.1.p 355 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYKLRGE 404
                           8******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.49E-32353413No hitNo description
PROSITE profilePS5103222.787354411IPR001471AP2/ERF domain
SMARTSM003801.3E-37354417IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-31354412IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-23354412IPR016177DNA-binding domain
PRINTSPR003672.5E-10355366IPR001471AP2/ERF domain
PfamPF008471.9E-14355404IPR001471AP2/ERF domain
PRINTSPR003672.5E-10377393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MGKGHSDDHF KAMAVAAAPA AKFVPGSSPI AEHSSSSFVP QFMTAIHHPW QENKEDEDHH  60
RFLNSVLSEG ARQHEKEEVG FLELGIGIRR ERDEEFLDLG NRLVPSVVHE QERHTSFVLP  120
QNSSCSGSTT SSSSCRAEPP GLVWSEPAAS VPQESSSSSS SRRPSFLYYS SGSGSSESSS  180
IGSSSHQQQH VCRYLSLGPR RTPDHHHHPY NNSSITAEFM PQAAAACAQQ QQTSSIAAGM  240
LSWMAATPAP AQVKNNTTGV QQPGLRLIPL AQCVVGQTPI QEGLHATTYS KNLQLAHQLQ  300
QQQMNWSPGT AAAAAAMMQQ EELLQQSSKQ TEKAGRLGGG GASGSDPVKK QTKLFRGVRQ  360
RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA ALAYDQAAYK LRGEFARLNF PHHRYYQLQE  420
AQATMGLRGA ASSSSPAHRV STHEELQFLT SPPPPPAAPT RAGPAAASGT WVDLDDHDLL  480
KNIVPSLDVD MSWAVDLSSP ANTTLALGNC QHHHRHASQA AQAAHASSSA AAAAAGLQQQ  540
TPSSSYSSRG ASHHLFTPNV NHNIRAFPSF TGSPPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-18353411160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-26ERF family protein