PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0017s0103.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Dof
Protein Properties Length: 613aa    MW: 64216.8 Da    PI: 7.048
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0017s0103.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.62.8e-38178238262
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           ++k  +cprCds +tkfCyynny ++qPr+fCk+C+ryWt+GG+lrnvP+G+grrk+k+++
  Sphfalx0017s0103.1.p 178 PNKPAQCPRCDSLDTKFCYYNNYDVNQPRHFCKNCQRYWTAGGTLRNVPIGAGRRKSKHVQ 238
                           67899****************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-27175235IPR003851Zinc finger, Dof-type
PfamPF027011.2E-31180236IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.053182236IPR003851Zinc finger, Dof-type
PROSITE patternPS013610184220IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MSKLRNWLLK EERAGSPVTV DPSIKLFGAT IAFTGGCENA HTGKEVIRDN NPSSWQTCTQ  60
ENRDSGGAGN AEEAGEEPPV QQTEDCHQPS LGMQIVSELG RSYLGANGPA AEAEEEEKSL  120
KSSKGGHSDS TVTTTGAETV LAVAAAASEE GGSMKHKEEE EEEGGHEIGS QGKTLKKPNK  180
PAQCPRCDSL DTKFCYYNNY DVNQPRHFCK NCQRYWTAGG TLRNVPIGAG RRKSKHVQAC  240
HVAVANGSVM SIVRPDSQET AQQLLPCSRS RISHLKHPQM PGQCPTLPAL DASSGGSPIT  300
SICQSSSISE GAVLLRHATG KMPPQPYACN NPLVASDGEI SLMGGFQVSG SACQKSAVDG  360
TQNGVGATGE VPSKVEKRQA VDECAHSLSE PHSIATQEAA KTGSPTLLHP GLQPDVGGSY  420
RPMSIRDGHG AGSPFGFYNG AWPYGFNVGW TGAVPTVSPG AIGPGQLLPG NGIATWNPPP  480
TGVWTGAGVL PWASLMPGMP GSPWVVPPGW GGGWTVPLPW AASGTASAVN GSVQPTSRLP  540
GMTMPVLGKH PREQLEGRRV DGALWGPKTL RIDDPKEAAQ SSVWNALGMP NPPESVLSGV  600
CSKSSNQKQR QK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62430.11e-33cycling DOF factor 1