PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0017s0148.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 542aa    MW: 58107.9 Da    PI: 6.9883
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0017s0148.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-181257147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +g+W++eEd  l ++v+++G ++W++I++ ++ gR++k+c++rw + 
  Sphfalx0017s0148.1.p 12 KGPWSPEEDAALQRLVEKHGARNWSLISKGIP-GRSGKSCRLRWCNQ 57
                          79******************************.***********985 PP
2Myb_DNA-binding48.52e-1566108347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           ++T+ Ed  +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Sphfalx0017s0148.1.p  66 PFTALEDSAIIQAHNLYGNK-WATIARILP-GRTDNAIKNHWNST 108
                           79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.752762IPR017930Myb domain
SuperFamilySSF466891.57E-319105IPR009057Homeodomain-like
SMARTSM007176.1E-171160IPR001005SANT/Myb domain
PfamPF002496.0E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231365IPR009057Homeodomain-like
CDDcd001671.27E-151456No hitNo description
SMARTSM007172.4E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129419.32663113IPR017930Myb domain
CDDcd001673.60E-1166109No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2066112IPR009057Homeodomain-like
PfamPF002491.0E-1266108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAALVEEFDR IKGPWSPEED AALQRLVEKH GARNWSLISK GIPGRSGKSC RLRWCNQLSP  60
LVHHRPFTAL EDSAIIQAHN LYGNKWATIA RILPGRTDNA IKNHWNSTLR RRHLADKTSQ  120
RSTSRGGAGD NRISPAAEEE EEDEEEIGSS FDGRKRNYSN EISSTDRSVQ QEESGCWEVD  180
SLRLKKLSFG AGASDDDDHV QLQQHMKNKR PISFGPDDDD PAAASHHRLK KKQLLASGCE  240
DASTVVSSAL LASDDDDVQM KLKKKLSFGG SDSSTQLMPA PALFRPVARA SAFNTFNPTP  300
PAPPSYTTHA SSSSSSGVVQ NSSTSIERHH QQEIHHQANK ASFGVNAVGA AGLLPMDPPT  360
SLSLSLPGTI IQSSISQAAS EQVAVLEKQP SMSSFTKGSS VAEVPAEMYD LIGATDKEAC  420
ANLMSLAVKS VVAQALAPVF PQQGQAAAGT KWISTSATAA PLGSLDAALN AGLLAIMRDM  480
VAKEVHNYLA AVHSSSCLPF FHALATTHHE HAASLASRDP TFSNQPEFLG FMATTAPRKA  540
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-36111123104C-Myb DNA-Binding Domain
1msf_C1e-36111123104C-Myb DNA-Binding Domain
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00632PBMTransfer from PK28565.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.18e-56myb domain protein 70