PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0017s0189.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WOX
Protein Properties Length: 376aa    MW: 41198.3 Da    PI: 5.2666
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0017s0189.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-19110170257
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           r R+t+++ ql++Le+lFe+ n +p++++++e++++l    ++te++V++WFqNr+a+ k+
  Sphfalx0017s0189.1.p 110 RLRWTPSQIQLQTLERLFEQgNGTPNKQHIKEITDELrrhgQITETNVYNWFQNRKARAKR 170
                           77*****************99**************************************97 PP
2Wus_type_Homeobox89.92.5e-29109171264
     Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                           +r RWtP++ Q++ Le+l+++G  tPnk++i++it eL+++G+i+++NV++WFQNrkaR +++
  Sphfalx0017s0189.1.p 109 TRLRWTPSQIQLQTLERLFEQGNGTPNKQHIKEITDELRRHGQITETNVYNWFQNRKARAKRR 171
                           678**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-17101175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-14104174IPR009057Homeodomain-like
PROSITE profilePS5007114.382106171IPR001356Homeobox domain
SMARTSM003893.8E-10108175IPR001356Homeobox domain
PfamPF000464.9E-17110170IPR001356Homeobox domain
CDDcd000863.39E-11110172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0051301Biological Processcell division
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MESEARLGRS LEFVAQQVQV QAISGGSLTP PAMGSTLPQP IHTSGSGQVM TDEQMETLRR  60
QISVYSTICQ QLVEMHKACL AQQPPLPGIM IGGQLPYDQM GTPNHKPTTR LRWTPSQIQL  120
QTLERLFEQG NGTPNKQHIK EITDELRRHG QITETNVYNW FQNRKARAKR RHQQVSVKDG  180
ESEADTDADS PRQKRQRQDR ELTHNESENF GDANGISSDG GNGGGNKQSP GQIDHHEQQE  240
DRVSSVLLQQ DDVKPTISFT SGAFDPQSFA QGATETSSVT MVDDNSKPWE AAVDANGKGT  300
LLGDSQGQII ATSEGNSSLH PVQIEERYSL AGGPVPSMDE SRKGLEKGQK EVQGTISTFW  360
NFHTVAASDP QIGEF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385206.13e-95WUSCHEL-related homeobox 8-like
RefseqXP_024385208.13e-95WUSCHEL-related homeobox 8-like
RefseqXP_024385209.13e-95WUSCHEL-related homeobox 8-like
TrEMBLA0A2K1K3415e-94A0A2K1K341_PHYPA; Uncharacterized protein
STRINGPP1S224_106V6.14e-90(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.12e-47WUSCHEL related homeobox 14