PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0017s0190.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NAC
Protein Properties Length: 403aa    MW: 45262.7 Da    PI: 5.9579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0017s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.5e-52171501128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                           +p+GfrFhPtdeelv +yL+ kv++kk el ++i+++d+yk+ePwdL++       + + ++++wyfFs++d+ky+tg r+nrat++g+
  Sphfalx0017s0190.1.p  17 VPVGFRFHPTDEELVGYYLHGKVASKKSEL-DIIRDLDLYKLEPWDLHElckmgkdSSSVKQTDWYFFSHKDRKYPTGYRANRATAAGF 104
                           599************************999.99**************8556555543333778************************** PP

                   NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           Wkatg+dk+v+++++ l+g++ktLvfy+grap+g+ktdW+mhe+rl
  Sphfalx0017s0190.1.p 105 WKATGRDKPVHCTQHGLIGMRKTLVFYTGRAPRGQKTDWIMHEFRL 150
                           ********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5610174IPR003441NAC domain
PROSITE profilePS5100554.83117174IPR003441NAC domain
PfamPF023656.2E-2718150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MMNGSSTPAA PTSMLQVPVG FRFHPTDEEL VGYYLHGKVA SKKSELDIIR DLDLYKLEPW  60
DLHELCKMGK DSSSVKQTDW YFFSHKDRKY PTGYRANRAT AAGFWKATGR DKPVHCTQHG  120
LIGMRKTLVF YTGRAPRGQK TDWIMHEFRL DGTSSPHMQH YEVGGWVVCR VFRKIKTSLK  180
TKRSHEKNAC SLAEEQDIAL LMPQQSSSGS PSAEIQLSCS ESAAGGGEWV ACNYPPAQPQ  240
EMQLQEQSLC KQEIDIDDYK YEINQDDNSP ATFPGDLLRF QQVAAEIQHL EEVGYMTNPR  300
NSPASSNFRG LIHGKKLDDC LHMMQQQSNS VADFEVGTRW SDDSSTDQGT LSALTNCYDE  360
TALDWIFEDV ATGDHMIMQA RSIPSVRGEE LLGDVINHHL QA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-461517413168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00136DAPTransfer from AT1G12260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366292.11e-83NAC domain-containing protein 76-like
RefseqXP_024366293.11e-83NAC domain-containing protein 76-like
TrEMBLX5IAY93e-82X5IAY9_PHYPA; NAC transcription factor PpVNS7
STRINGPP1S6_458V6.16e-83(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.17e-76NAC 007