PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0018s0169.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 647aa MW: 68748.7 Da PI: 6.8563

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0018s0169.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.6	1.1e-08	449	496	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Sphfalx0018s0169.1.p 449 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 496 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.81E-11	443	500	No hit	No description
SuperFamily	SSF47459	2.22E-16	443	512	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-16	445	509	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.669	445	495	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.8E-6	449	496	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-9	451	501	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence Send to blast
MQLWMEITMD DEGPSGNNVP SVSPSAGWQS SKLQAADMHF FAPETDSIDG YGTPNSAVMP 60 PLDSSYTSGA SPQRLGSGLL LTRGNCSWST CMDHTMNFRS MMGSLVGASA SSGVLAALQQ 120 AGAAAADLAT SHCLAQFSSD PGFAERAAKF SSFSSSNGNT YNSQTPYALG PDGVKPARGS 180 RSIIASDAGG DNVVDGKLSR SSSCSRLAKL APSSIITSAR RTSHGAGSSS VVQSKSPDAA 240 GRREMVESKS PVMQRDDMKM KKSLQTIGMS GREDMSPHAA AAMETFEAGT TEIGRRRGVN 300 DTTDDEAADH GFRHSSAAGS SQQACGDRDA CITGKRKHLV IQQTDELLYC KETAGGRNAA 360 AQAAATAAGG GDDTNVKRQR SSGENSAVRE VDAKLLRTVD RTLSESYSGE SSPLSMEKQE 420 SPCKPSEPPP PPKHDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCSKVTG 480 KAVMLDEIIN YVQSLQRQIE FLSMKLAAVN PGMDCTVDDF LCKKMQGSTA PMIMGPNTTT 540 MSYGHHHPQS QQQQVHNLQT VGHSGLDFKP LESSAEASLG RTMSAPVIGP VSSLDAFGDN 600 LSQLSSGWEG ELQSVVNMGF LQGRLSTWLP QESHCQMQAG KMKVEL*

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence Send to blast

MQLWMEITMD DEGPSGNNVP SVSPSAGWQS SKLQAADMHF FAPETDSIDG YGTPNSAVMP  60
PLDSSYTSGA SPQRLGSGLL LTRGNCSWST CMDHTMNFRS MMGSLVGASA SSGVLAALQQ  120
AGAAAADLAT SHCLAQFSSD PGFAERAAKF SSFSSSNGNT YNSQTPYALG PDGVKPARGS  180
RSIIASDAGG DNVVDGKLSR SSSCSRLAKL APSSIITSAR RTSHGAGSSS VVQSKSPDAA  240
GRREMVESKS PVMQRDDMKM KKSLQTIGMS GREDMSPHAA AAMETFEAGT TEIGRRRGVN  300
DTTDDEAADH GFRHSSAAGS SQQACGDRDA CITGKRKHLV IQQTDELLYC KETAGGRNAA  360
AQAAATAAGG GDDTNVKRQR SSGENSAVRE VDAKLLRTVD RTLSESYSGE SSPLSMEKQE  420
SPCKPSEPPP PPKHDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCSKVTG  480
KAVMLDEIIN YVQSLQRQIE FLSMKLAAVN PGMDCTVDDF LCKKMQGSTA PMIMGPNTTT  540
MSYGHHHPQS QQQQVHNLQT VGHSGLDFKP LESSAEASLG RTMSAPVIGP VSSLDAFGDN  600
LSQLSSGWEG ELQSVVNMGF LQGRLSTWLP QESHCQMQAG KMKVEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-50	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0018s0169.1.p