PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0018s0244.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Protein Properties

Length: 1076aa MW: 121985 Da PI: 8.0824

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0018s0244.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.3	3.8e-15	247	336	5	97
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 l p +v+ ++ l++p +f ++++ +++++ ++l d sg++W + r + ++ +t+GW+eF a +L +gD++vF+l ++++ ++ Sphfalx0018s0244.1.p 247 LRPFHVHGRAFLRFPVTFGKHFM--PTKTVPMRLIDASGNQWPMVW-LRDNETHMGFTRGWREFSLAEDLSDGDVCVFELLDTTDLMFR 332 56678889999******6666..457788***********.466666788*********************9998999888 PP EEEE CS B3 94 vkvf 97 v+vf Sphfalx0018s0244.1.p 333 VHVF 336 8887 PP
2	B3	35.4	1.9e-11	695	784	3	98
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 v+++s+v ++ ++ +p f ++h + e ++l+l+d g++ l sg+ vlt+GW++F + L+egD++vF+l+ ++ ++ Sphfalx0018s0244.1.p 695 VVMKKSNVYRNFIVKIPPAFRQAHI--PCEATDLKLQDAVGQQTHAFL-----SGE-VLTAGWQQFSLHHLLEEGDTCVFELItNKtED 775 57899*************98884..345679******99999.....333.7*********************99655799 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++v++fr Sphfalx0018s0244.1.p 776 LTFMVHIFR 784 999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.73E-21	236	338	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.5E-19	237	338	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.731	243	339	IPR003340	B3 DNA binding domain
SMART	SM01019	2.4E-11	243	339	IPR003340	B3 DNA binding domain
CDD	cd10017	4.22E-20	246	337	No hit	No description
Pfam	PF02362	1.9E-12	246	336	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.3E-16	686	784	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.79E-16	687	784	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.64E-15	691	784	No hit	No description
SMART	SM01019	0.0026	693	786	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.939	693	786	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.8E-9	695	784	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1076 aa Download sequence Send to blast
MELQLHMKKL CFDIAEGGIM DETPPLQAFE SLCSSESKHV QDSSCGKAEA LDSPGAHWNL 60 NEPYLHEPSD HLCPANDEYG ETITATQEIQ LLAHDQLLQV KETDSDDVLQ CQTLLGKLPH 120 DAAGEDLNTN KEHLKASNSN ANEVKQDYSG VGPATRFASQ RRPVVETLRD IMHTDVAYRQ 180 SFQACSTSNA QNVQPMINQA GELHREHDKV ARHLIPYPGL VMEREKAMEL GRFTVLKSDK 240 PCHLVVLRPF HVHGRAFLRF PVTFGKHFMP TKTVPMRLID ASGNQWPMVW LRDNETHMGF 300 TRGWREFSLA EDLSDGDVCV FELLDTTDLM FRVHVFCTER KSPRSQKKDS SNQHDHHHRA 360 NARAKRLQLQ DDNHCNNPYN EVLLYSSGKK RELSGRINMH VGAEQDKETT ASQLSHTFSP 420 SLKTLYNAFL RLPPPTDASK KDAMNSRERE GNLPEEMTCE KASTTSLVLV MEDKVKTSES 480 LQVHSSSKSE RCCKCSKRHK LEPGTECETY MEPGIPQDNT TRNLECDGEL LFTACNTGIA 540 KQDDRLGKLE PHHWGATKVD PVFQKEQKLQ ECHQSITMQR AKPASNRSTA EVKKDSEISA 600 QWWTRTCKPD KQCLRWQSDM SSLRCRKKPG ASWRRLTASN TNLSRNRQAS SLLQARVRKQ 660 LLFVGSKRLP VTQLQREAAR DAACALKTMN PSVVVVMKKS NVYRNFIVKI PPAFRQAHIP 720 CEATDLKLQD AVGQQTHAFL SGEVLTAGWQ QFSLHHLLEE GDTCVFELIT NKTEDLTFMV 780 HIFRVVEVDH SKVQWQDHYM ILSRGKCRNN EMHLITCDKK TEQDSSLAFS EKKNLEDEDA 840 TGCVFPGLGS TNALCIAVQK CMVRHNKPQV AKSSVLRERL AYRLWSSSSH PQHTAKTNDA 900 SSPAKETTTT TTTICDSRVR GTLEELSKVN QAARSSNHLL TRITIPSYSR RIHEQQKKKK 960 KIILPEKKKK EKTSNQISKQ SRKGNNTNLR AAERMVMPLP ADDDDDDDGK GEGIYYRVVR 1020 IIKKRFFENE KHYLTELDGP VLQSNEDGVL TEYNGILWWV PERAFSAGFS SCYLD*

Sequence ? help Back to Top

Protein Sequence Length: 1076 aa Download sequence Send to blast

MELQLHMKKL CFDIAEGGIM DETPPLQAFE SLCSSESKHV QDSSCGKAEA LDSPGAHWNL  60
NEPYLHEPSD HLCPANDEYG ETITATQEIQ LLAHDQLLQV KETDSDDVLQ CQTLLGKLPH  120
DAAGEDLNTN KEHLKASNSN ANEVKQDYSG VGPATRFASQ RRPVVETLRD IMHTDVAYRQ  180
SFQACSTSNA QNVQPMINQA GELHREHDKV ARHLIPYPGL VMEREKAMEL GRFTVLKSDK  240
PCHLVVLRPF HVHGRAFLRF PVTFGKHFMP TKTVPMRLID ASGNQWPMVW LRDNETHMGF  300
TRGWREFSLA EDLSDGDVCV FELLDTTDLM FRVHVFCTER KSPRSQKKDS SNQHDHHHRA  360
NARAKRLQLQ DDNHCNNPYN EVLLYSSGKK RELSGRINMH VGAEQDKETT ASQLSHTFSP  420
SLKTLYNAFL RLPPPTDASK KDAMNSRERE GNLPEEMTCE KASTTSLVLV MEDKVKTSES  480
LQVHSSSKSE RCCKCSKRHK LEPGTECETY MEPGIPQDNT TRNLECDGEL LFTACNTGIA  540
KQDDRLGKLE PHHWGATKVD PVFQKEQKLQ ECHQSITMQR AKPASNRSTA EVKKDSEISA  600
QWWTRTCKPD KQCLRWQSDM SSLRCRKKPG ASWRRLTASN TNLSRNRQAS SLLQARVRKQ  660
LLFVGSKRLP VTQLQREAAR DAACALKTMN PSVVVVMKKS NVYRNFIVKI PPAFRQAHIP  720
CEATDLKLQD AVGQQTHAFL SGEVLTAGWQ QFSLHHLLEE GDTCVFELIT NKTEDLTFMV  780
HIFRVVEVDH SKVQWQDHYM ILSRGKCRNN EMHLITCDKK TEQDSSLAFS EKKNLEDEDA  840
TGCVFPGLGS TNALCIAVQK CMVRHNKPQV AKSSVLRERL AYRLWSSSSH PQHTAKTNDA  900
SSPAKETTTT TTTICDSRVR GTLEELSKVN QAARSSNHLL TRITIPSYSR RIHEQQKKKK  960
KIILPEKKKK EKTSNQISKQ SRKGNNTNLR AAERMVMPLP ADDDDDDDGK GEGIYYRVVR  1020
IIKKRFFENE KHYLTELDGP VLQSNEDGVL TEYNGILWWV PERAFSAGFS SCYLD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	956	968	KKKKKIILPEKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-12	B3 family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0018s0244.1.p