PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0019s0042.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GRAS

Protein Properties

Length: 827aa MW: 90797.5 Da PI: 6.3344

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0019s0042.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366	5.3e-112	452	820	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 +lLl+cA+av+++d + a++l+a+l++++sp+g+ qR a+yfteAL ar++r++ +ly al+ ++ s se l+a++lf+e+ P+ Sphfalx0019s0042.1.p 452 SNLLLRCAQAVEQNDISHASELIAELRQHSSPYGSGAQRTAHYFTEALVARMSRTGFKLYTALTNNRPS---ASEMLKAFRLFVECVPL 537 689*******************************************************999888887...89*********** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177 ++sh+ N aI+ a+ ++rvHi+D++i +G+QWp+++ ++ gpp+lRiTg++ p+sg +e+++etg+rLa++Ae++gvpfe Sphfalx0019s0042.1.p 538 TRLSHVFLNLAIMHAIGDAKRVHIVDYGILYGVQWPCFIYHFSR-LPGPPHLRITGIDLPQSGfrPSERIQETGRRLARVAEHVGVPFE 625 **************************************75.6788*********9********************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 f++ +a+++e++++ +L ++++E+laVn++++l +lldesv +s+rd vL+ ++s++Pk++v + ++ +n++ F+ rf al++ s+ Sphfalx0019s0042.1.p 626 FHA-IAEKWEAITPAHLLLRNDEVLAVNCAFRLRHLLDESVVAASPRDLVLNRIRSMNPKIFVEAVVNSGYNAPFFMSRFRAALSHLST 713 .7********************************************************************************* PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 lf++++a++p e eri++E+e++gr+i n+vaceg er+er e +++W++r+++aGF+++p+ ek+ ++++++r+++ d y + e+ Sphfalx0019s0042.1.p 714 LFEAFDASMPYEIPERITIEKEMFGRQILNIVACEGLERVERAEPYKQWHSRITRAGFRQLPIMEKTRVKIRSMMRNFHRD-YGIGEDG 801 ***************************************************************************66.*** PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 ++++ gWkd+ L ++S+W+ Sphfalx0019s0042.1.p 802 AWFLSGWKDKILHAMSVWE 820 ****************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.854	425	801	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-109	452	820	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MAGSKHDRSG ASGGEVSPLA AQLQQAWMHT QMPKTAKRSS IAAPSSLQQQ SKSTPDHHHH 60 ESYSPRSSSS SPSVATDQSQ SALKSLSSIF PELAALTQQE KKPMISSVFE DGEYPDPTST 120 GQDVIGACPS TLFLKYEENT TTPVSQPNPR SFSASVPGAL HGSNSLEQYL AAATGSAAFL 180 RTSQSFSAGN NNNRSFYTTP AASSLSDAYS SDQYRASTLS PSEAETSGSS SSSSGISSFA 240 ADVDPADPNT FYSYLNDLMD DEPEENKCMF VQASAFQAMA KELGDLIGDH DSPTTPYSDH 300 SRSSEKDPEL ERWLEGVLSG PLPAEVPEQG LKHETTNTKS FANHESAASH EDLLQIFDSG 360 NNNNGSWTAA AACNNGLTGE VYVPGDHGGG AGASPRLSMI DRYKQLDSVS RSEVSEDVDD 420 VLHMPNMSSH VPKPIMSQQL SNGHHGPPVD LSNLLLRCAQ AVEQNDISHA SELIAELRQH 480 SSPYGSGAQR TAHYFTEALV ARMSRTGFKL YTALTNNRPS ASEMLKAFRL FVECVPLTRL 540 SHVFLNLAIM HAIGDAKRVH IVDYGILYGV QWPCFIYHFS RLPGPPHLRI TGIDLPQSGF 600 RPSERIQETG RRLARVAEHV GVPFEFHAIA EKWEAITPAH LLLRNDEVLA VNCAFRLRHL 660 LDESVVAASP RDLVLNRIRS MNPKIFVEAV VNSGYNAPFF MSRFRAALSH LSTLFEAFDA 720 SMPYEIPERI TIEKEMFGRQ ILNIVACEGL ERVERAEPYK QWHSRITRAG FRQLPIMEKT 780 RVKIRSMMRN FHRDYGIGED GAWFLSGWKD KILHAMSVWE PIPISP*

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MAGSKHDRSG ASGGEVSPLA AQLQQAWMHT QMPKTAKRSS IAAPSSLQQQ SKSTPDHHHH  60
ESYSPRSSSS SPSVATDQSQ SALKSLSSIF PELAALTQQE KKPMISSVFE DGEYPDPTST  120
GQDVIGACPS TLFLKYEENT TTPVSQPNPR SFSASVPGAL HGSNSLEQYL AAATGSAAFL  180
RTSQSFSAGN NNNRSFYTTP AASSLSDAYS SDQYRASTLS PSEAETSGSS SSSSGISSFA  240
ADVDPADPNT FYSYLNDLMD DEPEENKCMF VQASAFQAMA KELGDLIGDH DSPTTPYSDH  300
SRSSEKDPEL ERWLEGVLSG PLPAEVPEQG LKHETTNTKS FANHESAASH EDLLQIFDSG  360
NNNNGSWTAA AACNNGLTGE VYVPGDHGGG AGASPRLSMI DRYKQLDSVS RSEVSEDVDD  420
VLHMPNMSSH VPKPIMSQQL SNGHHGPPVD LSNLLLRCAQ AVEQNDISHA SELIAELRQH  480
SSPYGSGAQR TAHYFTEALV ARMSRTGFKL YTALTNNRPS ASEMLKAFRL FVECVPLTRL  540
SHVFLNLAIM HAIGDAKRVH IVDYGILYGV QWPCFIYHFS RLPGPPHLRI TGIDLPQSGF  600
RPSERIQETG RRLARVAEHV GVPFEFHAIA EKWEAITPAH LLLRNDEVLA VNCAFRLRHL  660
LDESVVAASP RDLVLNRIRS MNPKIFVEAV VNSGYNAPFF MSRFRAALSH LSTLFEAFDA  720
SMPYEIPERI TIEKEMFGRQ ILNIVACEGL ERVERAEPYK QWHSRITRAG FRQLPIMEKT  780
RVKIRSMMRN FHRDYGIGED GAWFLSGWKD KILHAMSVWE PIPISP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-51	457	821	25	380	Protein SCARECROW
5b3h_A	1e-51	457	821	24	379	Protein SCARECROW
5b3h_D	1e-51	457	821	24	379	Protein SCARECROW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-126	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Sphfalx0019s0042.1.p