PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0019s0088.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 517aa MW: 57013.7 Da PI: 7.2341

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0019s0088.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.3	1.9e-13	120	201	2	77
trihelix 2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 W++ e aL++a+re++ +l ++ k++ +W+ev + g+ r+pk+ + kw+nl++ +k+i++++kk ++ + Sphfalx0019s0088.2.p 120 WQDPEMDALVRAYREVHMKLAAAgkkgkqvfKSATDKWKEVQTLLFNVGVDRQPKEIERKWSNLSTAFKQIADWNKKV--GHPN 201 ******************98534344444599****************************************95..3443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-9	119	207	No hit	No description
Gene3D	G3DSA:3.40.50.620	4.1E-79	291	507	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold
SuperFamily	SSF52374	3.97E-50	294	510	No hit	No description
CDD	cd09286	6.40E-103	295	507	No hit	No description
TIGRFAMs	TIGR00482	6.3E-44	300	507	IPR005248	Probable nicotinate-nucleotide adenylyltransferase
Pfam	PF01467	1.9E-23	300	481	IPR004821	Cytidyltransferase-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009435	Biological Process	NAD biosynthetic process
GO:0009555	Biological Process	pollen development
GO:0009860	Biological Process	pollen tube growth
GO:0000309	Molecular Function	nicotinamide-nucleotide adenylyltransferase activity
GO:0004515	Molecular Function	nicotinate-nucleotide adenylyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MRDNTGNNKK QKGTDWWHES QVSEQPAAAP KEDIDPTGNS HAVAPIMPSS FGGVVGFPGI 60 VLGSQMVGAE GQAGSMEEGE CGGSSGGGVG IGEEGDDGEG DGKERSEKEG SAKKKRAEMW 120 QDPEMDALVR AYREVHMKLA AAGKKGKQVF KSATDKWKEV QTLLFNVGVD RQPKEIERKW 180 SNLSTAFKQI ADWNKKVGHP NYWELDETLK KEKTKAKELP ATFRVQLFDA MAEFLGDRVG 240 THRSRSPASS HMALPGLPYA VNSTGSSGVV EVTLPMDKLA VHTTPMDNYQ KRTQVVLVST 300 GSFNPPTYMH LRMFELAKDA LLSEGYDVLG CYMSPVGDAY NKKGLAPAEH RIRLCQLATQ 360 DSPFVMVDSW EATQSSYQRT LTVLSRVEAA VNSRAFAAEE KVRVMLLCGT DLLESMTKPG 420 VWIPEQVRVI LQEHGVVCIC RTGQDTRQLL LEHDILFSNR RHIMIVDELI HNDVSSTKVR 480 RNIARGLSVK YLVADTVINY IKTHQLYTSN PVAHQP*

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MRDNTGNNKK QKGTDWWHES QVSEQPAAAP KEDIDPTGNS HAVAPIMPSS FGGVVGFPGI  60
VLGSQMVGAE GQAGSMEEGE CGGSSGGGVG IGEEGDDGEG DGKERSEKEG SAKKKRAEMW  120
QDPEMDALVR AYREVHMKLA AAGKKGKQVF KSATDKWKEV QTLLFNVGVD RQPKEIERKW  180
SNLSTAFKQI ADWNKKVGHP NYWELDETLK KEKTKAKELP ATFRVQLFDA MAEFLGDRVG  240
THRSRSPASS HMALPGLPYA VNSTGSSGVV EVTLPMDKLA VHTTPMDNYQ KRTQVVLVST  300
GSFNPPTYMH LRMFELAKDA LLSEGYDVLG CYMSPVGDAY NKKGLAPAEH RIRLCQLATQ  360
DSPFVMVDSW EATQSSYQRT LTVLSRVEAA VNSRAFAAEE KVRVMLLCGT DLLESMTKPG  420
VWIPEQVRVI LQEHGVVCIC RTGQDTRQLL LEHDILFSNR RHIMIVDELI HNDVSSTKVR  480
RNIARGLSVK YLVADTVINY IKTHQLYTSN PVAHQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1kqn_A	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_B	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_C	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_D	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_E	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqn_F	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_A	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_B	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_C	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_D	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_E	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kqo_F	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_A	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_B	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_C	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_D	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_E	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE
1kr2_F	1e-59	286	509	1	256	NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024358097.1	0.0	uncharacterized protein LOC112273477 isoform X5
Refseq	XP_024358098.1	0.0	uncharacterized protein LOC112273477 isoform X5
TrEMBL	A0A2K1IWA5	0.0	A0A2K1IWA5_PHYPA; Uncharacterized protein
STRING	PP1S241_77V6.2	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Sphfalx0019s0088.2.p