PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0019s0143.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 535aa    MW: 57609.4 Da    PI: 5.1102
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0019s0143.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.6e-171663148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT  Ed +lv +v+++G g+W+++ ++ g+ R++k+c++rw ++l
  Sphfalx0019s0143.1.p 16 KGPWTSTEDAILVSYVNKHGEGNWNSVQKHSGLYRCGKSCRLRWANHL 63
                          79******************************************9986 PP
2Myb_DNA-binding48.71.7e-1569112146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +g++T++E+  +v+++ +lG++ W++ a+ ++ gRt++++k++w++
  Sphfalx0019s0143.1.p  69 KGAFTPDEERTIVELHSKLGNK-WARMAAQLP-GRTDNEIKNYWNT 112
                           799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8121163IPR017930Myb domain
SuperFamilySSF466897.49E-3013110IPR009057Homeodomain-like
SMARTSM007171.5E-141565IPR001005SANT/Myb domain
PfamPF002494.3E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-231770IPR009057Homeodomain-like
CDDcd001675.60E-111863No hitNo description
PROSITE profilePS5129424.66664118IPR017930Myb domain
SMARTSM007178.7E-1568116IPR001005SANT/Myb domain
PfamPF002492.5E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2571118IPR009057Homeodomain-like
CDDcd001671.80E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDLPQEIFAD AGNLKKGPWT STEDAILVSY VNKHGEGNWN SVQKHSGLYR CGKSCRLRWA  60
NHLRPNLKKG AFTPDEERTI VELHSKLGNK WARMAAQLPG RTDNEIKNYW NTRIKRRMRA  120
GLPVYPMDIP KSAASLSQFY FKQEDDGRKM GTRADSESEF ASSVVTLLGD RQSHQLSSLH  180
GGHQARSFYS IMSITDLPLT SVVANQGSAG VGKGIVNPSL PHIKRVQHSS PYGGTDGSHG  240
SVSFSQLSDG SSKTFQPELC TEASRTCTHN STRRPMMSVF ADGLDPYTVP YDGTCGLISM  300
PFGSFTPNAS SKLELPLSQS AESADSAGTP RSAITSPLMS LSRSSQLLSE DDSFGSNASD  360
FLDALMKEAH PTEGFDQVRT DLIDQLLALT AGNISPDVAA LLVGTDKTRW GENMNPMATI  420
EAHASVYGEG MSQNCCPGSL KEPGTQCHLL SGEVLSLSAS QVAGPRVEDI PAEIPLGGCT  480
DEDFLTLLDF ASADAVPEWY TPAEYFSAGG IPCTSLVDVI DNVPSPEVAV DLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32131184108B-MYB
1h8a_C3e-321411825128MYB TRANSFORMING PROTEIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024397297.11e-158transcription factor GAMYB-like
RefseqXP_024397298.11e-158transcription factor GAMYB-like
TrEMBLA0A2K1JEJ01e-157A0A2K1JEJ0_PHYPA; Uncharacterized protein
STRINGPP1S66_200V6.11e-157(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-70myb domain protein 33