PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0020s0076.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 643aa MW: 70724.2 Da PI: 7.1146

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0020s0076.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.2	3.7e-12	12	91	1	73
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwen.lnkrykkikegekkrts 73 rWt+ e l+L +a r +ee+ r+ + + +We+v++++r++g+ r++ qC +w++ l +y++++e+++k+++ Sphfalx0020s0076.1.p 12 RWTRYENLVLANALRAREEEARDVAtkssvgMASDKWERVANFCRRQGVMRTAAQCHGRWRKgLLPDYRRVREWQRKNHE 91 8***************9999753334566899**********************87699*********9754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-4	8	81	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.655	12	75	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MEAEDELRVA QRWTRYENLV LANALRAREE EARDVATKSS VGMASDKWER VANFCRRQGV 60 MRTAAQCHGR WRKGLLPDYR RVREWQRKNH ENGRGPTAES SSSSSYWKMK EKQRRECKLP 120 ISMDEELYKV LFTFMEPELK ITTGSPESEV DSGRHAAIIA LDPKDSREAQ AQCPPLDSTQ 180 LPAAAPDTGT CSAEDMGQNS TLQKRKRLSS GLVAPEAIVT VDTSRIPMGI LVTVPHSLNS 240 TQGYNDGAAA VGPAMSSCLE IAQMAMSSHR ETDKSSCLKS DGDKSRRSAL EAHLVEQKEA 300 LRMQEKLVSD QVIQLVEKSN ARLQGQLQAL FAQMHMQVQV VSAQMQAQVH EATQSVQAEL 360 QTLLQKHSDQ VHSYLGSCYT PAQSQFAGHC PDVDMHAPKR GSIGATSSQP LHDDLAQSGP 420 SSCTPRQANS ERDRHVRQRQ GDHHAEAFPT HLKSQLPAAE QVMDRILAPP QLVPSSAPIW 480 TQAQFVISEL DRVLGHQRPA NLPIISPPSK CTYSLSEPHR SLRQQPLQKQ KTSGPHADLP 540 SGGVKALEAQ VSSDPDRVTS DKSRRGPPAI SIHGPVLALP RVVTTPTSRT LHDQDTCKAN 600 KDTTDSETLC EEAMPDSEEE LGVTSGKTTS HQTSGEPEDR RS*

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MEAEDELRVA QRWTRYENLV LANALRAREE EARDVATKSS VGMASDKWER VANFCRRQGV  60
MRTAAQCHGR WRKGLLPDYR RVREWQRKNH ENGRGPTAES SSSSSYWKMK EKQRRECKLP  120
ISMDEELYKV LFTFMEPELK ITTGSPESEV DSGRHAAIIA LDPKDSREAQ AQCPPLDSTQ  180
LPAAAPDTGT CSAEDMGQNS TLQKRKRLSS GLVAPEAIVT VDTSRIPMGI LVTVPHSLNS  240
TQGYNDGAAA VGPAMSSCLE IAQMAMSSHR ETDKSSCLKS DGDKSRRSAL EAHLVEQKEA  300
LRMQEKLVSD QVIQLVEKSN ARLQGQLQAL FAQMHMQVQV VSAQMQAQVH EATQSVQAEL  360
QTLLQKHSDQ VHSYLGSCYT PAQSQFAGHC PDVDMHAPKR GSIGATSSQP LHDDLAQSGP  420
SSCTPRQANS ERDRHVRQRQ GDHHAEAFPT HLKSQLPAAE QVMDRILAPP QLVPSSAPIW  480
TQAQFVISEL DRVLGHQRPA NLPIISPPSK CTYSLSEPHR SLRQQPLQKQ KTSGPHADLP  540
SGGVKALEAQ VSSDPDRVTS DKSRRGPPAI SIHGPVLALP RVVTTPTSRT LHDQDTCKAN  600
KDTTDSETLC EEAMPDSEEE LGVTSGKTTS HQTSGEPEDR RS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	4e-13	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0020s0076.1.p