PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0020s0104.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 1037aa    MW: 111588 Da    PI: 5.6595
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0020s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058334356123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y C++C + F +  +L+ H + H
  Sphfalx0020s0104.1.p 334 YMCQICEEEFETAKELNLHKNEH 356
                           89******************998 PP
2zf-C2H211.70.000810061022521
                            TTTEEESSHHHHHHHHH CS
               zf-C2H2    5 dCgksFsrksnLkrHir 21  
                            +C++sF++ ++L +H++
  Sphfalx0020s0104.1.p 1006 ICDRSFTSLEHLSTHQK 1022
                            7**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.827141169IPR007087Zinc finger, C2H2
SMARTSM003558.5141164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280143164IPR007087Zinc finger, C2H2
PfamPF139120.044143159IPR007087Zinc finger, C2H2
SMARTSM003550.022334356IPR015880Zinc finger, C2H2-like
PfamPF139120.025334358IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037334356IPR007087Zinc finger, C2H2
PROSITE patternPS000280336356IPR007087Zinc finger, C2H2
SMARTSM003550.0072420442IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764420442IPR007087Zinc finger, C2H2
PfamPF139125.0E-7422444IPR007087Zinc finger, C2H2
PROSITE patternPS000280422442IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-6704727No hitNo description
SMARTSM003550.46705727IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-7705729IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66705732IPR007087Zinc finger, C2H2
PROSITE patternPS000280707727IPR007087Zinc finger, C2H2
SuperFamilySSF576671.96E-6811838No hitNo description
PROSITE profilePS501579.619816843IPR007087Zinc finger, C2H2
SMARTSM003550.43816838IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-12816840IPR007087Zinc finger, C2H2
PROSITE patternPS000280818838IPR007087Zinc finger, C2H2
SMARTSM0035520010021024IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1037 aa     Download sequence    Send to blast
MEAAAQDLLA AAMDVDGVVE SEAKEHQGSS MHGSLEKGGG GGGVAADPEM STLPTTSANK  60
ETKNRQSVTA GAACGGAEED SGTTGSSGYL DVVVVPNQRK RNCDSLVASD SAASLGGGGG  120
GGGGEGEEEA AAAVSQQQQH VLCRLCKRGF SSGAALRGHY FRAHGGGSPS AAAMEDGNAR  180
TSNSENGGDK EQQLSSWTTG RGTYLVKNPV ASHIHSTGSD LDSCRDDDES SPSLASSRPP  240
PPPPPPPPRG TIVSCSRSEA GRLTKKKKRG EVAAAQAESS SPMYQEQQED EEDMEAEEDQ  300
EEEATSVLLG SSSSQATNNM QEVDMEEVTE GTSYMCQICE EEFETAKELN LHKNEHPQYI  360
LRMNPKRSQR FIDQDCSDLM GGATAAAGPT HHHQHHHHHH NHQSKKAAPV SSGKSEDKLI  420
SCTECNKKFG SMKALFGHMR CHPERYWRGI QPPDRSTSAQ DHAAAAAVAH THHGSYRRKK  480
RSPPIVLPKA EPESESEMNS KQADAAGKAS EVDDSDTESI EAAYINGSSS GRHNNSGPAG  540
GWRTKKRTKR VRQMVRSLQA VAGSAAAAGA PQEEEEEEEC PSTPPTEDTQ VQKDIVFALM  600
LLHPQRIAQL NPPFLEHKLS KDKDPLMDIN VAEKFKRKDN ENAACHETEK HHHHHYSEAD  660
SKVKKMQQAE VAGGGEDGVV VSNNNQDLDE LETQGEQGGG TRMMYQCATC KRIFKSHQAL  720
GGHRASHKKV KGCFARTSIN DEEESGRQDQ SPEDDENKEG ISPDEDFVKV EEHNLPLEPQ  780
DQSHISVEDA EPCDYLVVAK GDNEEMLNAA RKTKGHECSI CHRVFNSGQA LGGHKRCHWG  840
GAATAGSNEA TTTTHNINNK NAMVMATVEQ LGLQGFHPIQ GLQSVPEKKG IMLEGILDLN  900
MPAPECAEEM VEEQVASASG IMAPISRHSY LPFPTFAIDS AASINNQHPF SDLVVKGTKH  960
MKFQGESLVN QVEKNLEPVA SGTSDTVGFR TVDKTMDQEM NHFSSICDRS FTSLEHLSTH  1020
QKPHAAIMGP VPGLTV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-18C2H2-like zinc finger protein