PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0022s0081.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 761aa MW: 81818.7 Da PI: 6.1447

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0022s0081.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	9.8e-09	512	558	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h +Er RR + ++++++L +++P+ kK + ++L+ +++YI+ L Sphfalx0022s0081.1.p 512 QKHMLAERDRRFKFKEKIHTLCSIVPTT-----KKKDNLSVLTNTIDYIRRL 558 57999********************9.....78899**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.874	509	558	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-12	512	570	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.97E-8	512	563	No hit	No description
Pfam	PF00010	1.7E-6	512	558	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-12	513	567	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-7	515	564	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence Send to blast
MATSGAAAAS ELAGHGDNVE FNWEERFQAL VQNWSWIDYI VVWKLNPHTP RALVWHRGYF 60 NDRSSSFHPE YSRRIAPIFS SIYRSCVFRS SNSGYAARAV YEQAPLWWTS NQPRLPTDER 120 KDQFLQELGI KTIVCLPGLG TDGNMYCLEL ASTQLKQESS GMLQALLAFA SGSREQQLLA 180 AGTIPHDGAA GLDEEELAVA QQQQENIQLE SVSTPSSDAE AAGGVPTDMM LNLWASMSDI 240 DDAQMQMSSF MQRSTLDSLV MAHDIMQIGQ PPAAAAATMF GTTTQYPAMP VSATPAFHNV 300 LPYHQLPGQH QSASTPYQRM ETPELSAAST TALEAAPSSS MNRLQAAGLP LAPADPSSHV 360 RQGMLAQLAG DTRMPPAGSA RAVDQQLGNP SESTVRSRAA AVSLHSPFKS FEPISRHPKL 420 RRLDDSRDTG NIAGPSKPRQ PMIELWIKDL CPRIQESDRM KRRLQLGATV AGSSMNPAGA 480 AGGSFMQGDT HVSADQQYYS PGWIEEQAQI AQKHMLAERD RRFKFKEKIH TLCSIVPTTK 540 KKDNLSVLTN TIDYIRRLKE QIAGLEMAGS TSTAAASTHD PAVLQAPAVT SSAGPSSSTA 600 AAELAQAQQQ LRSEAAAAAT THPSSSSINN TTTVAVSWRQ FELAGTEAAG AHGAMRAGTN 660 TGISSNAAGQ LVIEVETPYN NPQSLIQVLS VVQDLGLDLD SLSSGNLNNG RMQISVRVLA 720 PAGSSSSQQL IQLSSVVKEK LETMLALDSR NTPSTTSEMQ *

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence Send to blast

MATSGAAAAS ELAGHGDNVE FNWEERFQAL VQNWSWIDYI VVWKLNPHTP RALVWHRGYF  60
NDRSSSFHPE YSRRIAPIFS SIYRSCVFRS SNSGYAARAV YEQAPLWWTS NQPRLPTDER  120
KDQFLQELGI KTIVCLPGLG TDGNMYCLEL ASTQLKQESS GMLQALLAFA SGSREQQLLA  180
AGTIPHDGAA GLDEEELAVA QQQQENIQLE SVSTPSSDAE AAGGVPTDMM LNLWASMSDI  240
DDAQMQMSSF MQRSTLDSLV MAHDIMQIGQ PPAAAAATMF GTTTQYPAMP VSATPAFHNV  300
LPYHQLPGQH QSASTPYQRM ETPELSAAST TALEAAPSSS MNRLQAAGLP LAPADPSSHV  360
RQGMLAQLAG DTRMPPAGSA RAVDQQLGNP SESTVRSRAA AVSLHSPFKS FEPISRHPKL  420
RRLDDSRDTG NIAGPSKPRQ PMIELWIKDL CPRIQESDRM KRRLQLGATV AGSSMNPAGA  480
AGGSFMQGDT HVSADQQYYS PGWIEEQAQI AQKHMLAERD RRFKFKEKIH TLCSIVPTTK  540
KKDNLSVLTN TIDYIRRLKE QIAGLEMAGS TSTAAASTHD PAVLQAPAVT SSAGPSSSTA  600
AAELAQAQQQ LRSEAAAAAT THPSSSSINN TTTVAVSWRQ FELAGTEAAG AHGAMRAGTN  660
TGISSNAAGQ LVIEVETPYN NPQSLIQVLS VVQDLGLDLD SLSSGNLNNG RMQISVRVLA  720
PAGSSSSQQL IQLSSVVKEK LETMLALDSR NTPSTTSEMQ *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	2e-08	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0022s0081.1.p