PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0022s0081.7.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 750aa MW: 80742.5 Da PI: 6.0703

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0022s0081.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.6e-09	501	547	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h +Er RR + ++++++L +++P+ kK + ++L+ +++YI+ L Sphfalx0022s0081.7.p 501 QKHMLAERDRRFKFKEKIHTLCSIVPTT-----KKKDNLSVLTNTIDYIRRL 547 57999********************9.....78899**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.874	498	547	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-12	501	559	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-6	501	547	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.81E-8	501	552	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-12	502	556	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-7	504	553	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MATSGAAAAS ELAGHGDNVE FNWEERFQAL VQNWSWIDYI VVWKLNPHTP RALVWHRGYF 60 NDRSSSFHPE YSRRIAPIFS SIYRSCVFRS SNSGYAARAV YEQAPLWWTS NQPRLPTDER 120 KDQFLQELGI KTIVCLPGLG TDGNMYCLEL ASTQLESSGM LQALLAFASG SREQQLLAAG 180 LDEEELAVAQ QQQENIQLES VSTPSSDAEA AGGVPTDMML NLWASMSDID DAQMQMSSFM 240 QRSTLDSLVM AHDIMQIGQP PAAAAATMFG TTTQYPAMPV SATPAFHNVL PYHQLPGQHQ 300 SASTPYQRME TPELSAASTT ALEAAPSSSM NRLQAAGLPL APADPSSHVR QGMLAQLAGD 360 TRMPPAGSAR AVDQQLGNPS ESTVRSRAAA VSLHSPFKSF EPISRHPKLR RLDDSRDTGN 420 IAGPSKPRQP MIELWIKDLC PRIQESDRMK RRLQLGATVA GSSMNPAGAA GGSFMQGDTH 480 VSADQQYYSP GWIEEQAQIA QKHMLAERDR RFKFKEKIHT LCSIVPTTKK KDNLSVLTNT 540 IDYIRRLKEQ IAGLEMAGST STAAASTHDP AVLQAPAVTS SAGPSSSTAA AELAQAQQQL 600 RSEAAAAATT HPSSSSINNT TTVAVSWRQF ELAGTEAAGA HGAMRAGTNT GISSNAAGQL 660 VIEVETPYNN PQSLIQVLSV VQDLGLDLDS LSSGNLNNGR MQISVRVLAP AGSSSSQQLI 720 QLSSVVKEKL ETMLALDSRN TPSTTSEMQ*

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MATSGAAAAS ELAGHGDNVE FNWEERFQAL VQNWSWIDYI VVWKLNPHTP RALVWHRGYF  60
NDRSSSFHPE YSRRIAPIFS SIYRSCVFRS SNSGYAARAV YEQAPLWWTS NQPRLPTDER  120
KDQFLQELGI KTIVCLPGLG TDGNMYCLEL ASTQLESSGM LQALLAFASG SREQQLLAAG  180
LDEEELAVAQ QQQENIQLES VSTPSSDAEA AGGVPTDMML NLWASMSDID DAQMQMSSFM  240
QRSTLDSLVM AHDIMQIGQP PAAAAATMFG TTTQYPAMPV SATPAFHNVL PYHQLPGQHQ  300
SASTPYQRME TPELSAASTT ALEAAPSSSM NRLQAAGLPL APADPSSHVR QGMLAQLAGD  360
TRMPPAGSAR AVDQQLGNPS ESTVRSRAAA VSLHSPFKSF EPISRHPKLR RLDDSRDTGN  420
IAGPSKPRQP MIELWIKDLC PRIQESDRMK RRLQLGATVA GSSMNPAGAA GGSFMQGDTH  480
VSADQQYYSP GWIEEQAQIA QKHMLAERDR RFKFKEKIHT LCSIVPTTKK KDNLSVLTNT  540
IDYIRRLKEQ IAGLEMAGST STAAASTHDP AVLQAPAVTS SAGPSSSTAA AELAQAQQQL  600
RSEAAAAATT HPSSSSINNT TTVAVSWRQF ELAGTEAAGA HGAMRAGTNT GISSNAAGQL  660
VIEVETPYNN PQSLIQVLSV VQDLGLDLDS LSSGNLNNGR MQISVRVLAP AGSSSSQQLI  720
QLSSVVKEKL ETMLALDSRN TPSTTSEMQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	2e-08	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0022s0081.7.p