PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0038.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 886aa    MW: 96775.2 Da    PI: 8.7107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.8e-10881601798
                           E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                            +p  f ++h++    +  ltl+   sg +W+v l  ++++    + +GWk F+ ++ Lk g+ +vF+l+ +++f  vv++f+
  Sphfalx0023s0038.1.p  88 EIPAAFWRQHSSAM--QEVLTLQGgDSGCEWQVSL--CNGG----FYDGWKAFAMDHFLKKGEHLVFTLVANDRF--VVHIFD 160
                           59999**9996553..347999997899*******..8888....88***********************99999..***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.03E-1166160No hitNo description
SMARTSM010191.1E-478162IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-1187160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1287160IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-788160IPR003340B3 DNA binding domain
PROSITE profilePS5086310.06689162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MGGCSGDVHN NGNNALASSS FPRFLTTTTE LAIMHNTRHQ PFLKKKKLEM RVNKDQRSYL  60
GLLILWFFSL LLLESECFFL LATSRTSEIP AAFWRQHSSA MQEVLTLQGG DSGCEWQVSL  120
CNGGFYDGWK AFAMDHFLKK GEHLVFTLVA NDRFVVHIFD EFGSEKLISR GLSSKGQRQQ  180
LHCIPSQQED DITESGISEK QKPPGALMHE NGAFVLACHS GAGKAYGGGE HANVSTVLDM  240
KVTDESDHGH KPCGIQAGDT TISSCGKDLG ITAALQVKQR KPASASSRLP SSWMRTPMRV  300
RLARSAIARA RQKKLLEDTG KGCGTLQSKD LYSAKDEEEE VLFHNESITH SDDHVFLHSG  360
TRCSSEHDTQ NRFSASGCAT GLTTSLPLEQ MKTLHSMEKS SKLRYTCSSY GTTGYFRNCC  420
KEDSITEGVP AVKSNTMRGD PTRGLLREQQ MKGEKEQCAL ESEEHGEQNG ITCCRSEEKS  480
RYPAKLEVTV DYSKHLNIHA VEGGIVVGQD CGSPDEGKNA TSGRQQKYSS DIAASDGTTA  540
LGLASGSGQT RGRGGCMEKN MLVKSADSSV LHEEAALQDV NGMIDRAAVN EFQKPNVIEG  600
KKYDALDAAH AFETESKKPC VLVVMKPSYV QRNFAFGVPA KSSREHFPKT DAAVTLVDIA  660
VVEVCDHVSN GKADGRTIGP SANGGVSTRL RTTLVEPTNS PSAFSSEGGV HREFHGKQDT  720
KIVRNEGCDT GKKRKKLETS VATTLIKKEC GTGKKRKMPA IPVATVKSCQ AVNSAKKKKQ  780
GYLIKRNKSF PTKGMKQRRN RRVISTSHIA PTAVKSEAIQ NAGNLYHIVR LIDRRIGRNG  840
VLYLVEIEGA VRQGSNKGSA EQDKDGNWWV PSNHFTSDFV SCFID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1731735KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-