PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0023s0043.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HD-ZIP

Protein Properties

Length: 446aa MW: 48000.1 Da PI: 8.162

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0023s0043.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.5e-18	267	321	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq ++Lee F+++++++ +++ LA++l+L rqV vWFqNrRa+ k Sphfalx0023s0043.1.p 267 RKKLRLSKEQSTILEESFKEHSTLNPKQKNTLARQLDLRPRQVEVWFQNRRARTK 321 778899***********************************************98 PP
2	HD-ZIP_I/II	122.8	1.6e-39	267	356	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LEesF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d l+ en+rL+ke +eL+ Sphfalx0023s0043.1.p 267 RKKLRLSKEQSTILEESFKEHSTLNPKQKNTLARQLDLRPRQVEVWFQNRRARTKLKQTEVDCERLKRCCDCLALENRRLQKELHELK- 354 69*************************************************************************************9. PP HD-ZIP_I/II 90 el 91 ++ Sphfalx0023s0043.1.p 355 AV 356 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.1E-17	246	321	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-18	257	324	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.2	263	323	IPR001356	Homeobox domain
SMART	SM00389	4.2E-13	266	327	IPR001356	Homeobox domain
CDD	cd00086	1.75E-16	267	324	No hit	No description
Pfam	PF00046	2.1E-15	267	321	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	298	321	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.0E-9	323	356	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.5E-15	323	366	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MATLAEGKDA IREEMVKLSW AMMQQANYSG PPVSLGAAGS VSKNLSLKLQ QQPTISAAVA 60 ASAMEDVHDI TAAAVISNNA SAGVTITPAP RKQFPVQLNL LPPLPCPSSV QSPSKSSSAM 120 SPQLPYPSCS SKYSFPMTWQ HPAISLDRSD NAARLETVVV EAACYSSGTQ ALLQGAAASP 180 LRDMIDVNQV PASVGNSCED ESLVDVQSSP GSSSGLKRER ASSMQQHNMN MFDLLEQRDS 240 PCEISSRAAG SDDEELERLA GGTSYTRKKL RLSKEQSTIL EESFKEHSTL NPKQKNTLAR 300 QLDLRPRQVE VWFQNRRART KLKQTEVDCE RLKRCCDCLA LENRRLQKEL HELKAVKAVA 360 SISSAPAAGR GGGTHMSQQQ QQQQDYSSYS RPLLPAAATL TMCPSCERVA TVADNRAAHT 420 SNNFTKPAPA PAFSPHLVQS SAACS*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MATLAEGKDA IREEMVKLSW AMMQQANYSG PPVSLGAAGS VSKNLSLKLQ QQPTISAAVA  60
ASAMEDVHDI TAAAVISNNA SAGVTITPAP RKQFPVQLNL LPPLPCPSSV QSPSKSSSAM  120
SPQLPYPSCS SKYSFPMTWQ HPAISLDRSD NAARLETVVV EAACYSSGTQ ALLQGAAASP  180
LRDMIDVNQV PASVGNSCED ESLVDVQSSP GSSSGLKRER ASSMQQHNMN MFDLLEQRDS  240
PCEISSRAAG SDDEELERLA GGTSYTRKKL RLSKEQSTIL EESFKEHSTL NPKQKNTLAR  300
QLDLRPRQVE VWFQNRRART KLKQTEVDCE RLKRCCDCLA LENRRLQKEL HELKAVKAVA  360
SISSAPAAGR GGGTHMSQQQ QQQQDYSSYS RPLLPAAATL TMCPSCERVA TVADNRAAHT  420
SNNFTKPAPA PAFSPHLVQS SAACS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	271	TRKKLRL
2	315	323	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P46602	7e-50	HAT3_ARATH; Homeobox-leucine zipper protein HAT3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-49	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Sphfalx0023s0043.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]